RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 SERPINB1P30740 379 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 PIK3CBP42338 1070 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 KRT6CP48668 564 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 HTR6P50406 440 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 ABRAXAS2Q15018 415 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 RBBP5Q15291 538 aaKnown RBP12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 MEP1AQ16819 746 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 SYT16Q17RD7 645 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 MFSD4BQ5TF39 518 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 ADNP2Q6IQ32 1131 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 MAVSQ7Z434 540 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 TRIM46Q7Z4K8 759 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 VN1R4Q7Z5H5 301 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 MYLK4Q86YV6 388 aaPredicted RBP12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 WDR75Q8IWA0 830 aaKnown RBP12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 OR4N4Q8N0Y3 316 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 TBC1D19Q8N5T2 526 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 TTLQ8NG68 377 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 HUS1BQ8NHY5 278 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 AGR3Q8TD06 166 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 CREB3L4Q8TEY5 395 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 ZNF473Q8WTR7 871 aaKnown RBP12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 TWIST2Q8WVJ9 160 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 REPS1Q96D71 796 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 NPAS2Q99743 824 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 CCT7Q99832 543 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 ZFYVE21Q9BQ24 234 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 SLC6A16Q9GZN6 736 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 FARSBQ9NSD9 589 aaKnown RBP12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 ZFP69BQ9UJL9 534 aa12.93□□□□□ -0.34
SHKBP1-218ENST00000598907 NPIPB8E9PQR5 432 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 HS6ST1O60243 411 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 NME2P1O60361 137 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 PRMT3O60678 531 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 CRCPO75575 148 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 CLEC3AO75596 197 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 JUNP05412 331 aaKnown RBP12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 KITP10721 976 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 HSD3B1P14060 373 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 NME2P22392 152 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 HSD3B2P26439 372 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 UQCRC1P31930 480 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 NEK2P51955 445 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 DCAF7P61962 342 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 BTKQ06187 659 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 HYAL2Q12891 473 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 IFT88Q13099 833 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 MUM1Q2TAK8 710 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 XKR7Q5GH72 579 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 Q5PR19 223 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 ACAD11Q709F0 780 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 WDR53Q7Z5U6 358 aaPredicted RBP12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 ZC3H7AQ8IWR0 971 aaKnown RBP12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 AFAP1L2Q8N4X5 818 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 HORMAD2Q8N7B1 307 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 TRPV3Q8NET8 790 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 NT5CQ8TCD5 201 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 SELENOMQ8WWX9 145 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 STON2Q8WXE9 905 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 MMABQ96EY8 250 aaPredicted RBP12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 MAELQ96JY0 434 aaKnown RBP12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 ELOVL6Q9H5J4 265 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 MEAF6Q9HAF1 191 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 BRF2Q9HAW0 419 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 MARCOQ9UEW3 520 aaPredicted RBP12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 CBLCQ9ULV8 474 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 FIS1Q9Y3D6 152 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 USH1CQ9Y6N9 552 aa12.92□□□□□ -0.34
SHKBP1-218ENST00000598907 ANKDD1BA6NHY2 528 aa12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 MAGEB17A8MXT2 336 aa12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 PIP5K1BO14986 540 aa12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 SRPX2O60687 465 aaPredicted RBP12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 CHEK2O96017 543 aa12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 PCNAP12004 261 aa12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 PRPH2P23942 346 aa12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 MAT1AQ00266 395 aaKnown RBP12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 CSTF3Q12996 717 aaKnown RBP12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 PWP1Q13610 501 aa12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 ADPRMQ3LIE5 342 aa12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 CMPK2Q5EBM0 449 aa12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 EMC4Q5J8M3 183 aa12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 ZNF468Q5VIY5 522 aaPredicted RBP12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 PLAG1Q6DJT9 500 aa12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 TMEM205Q6UW68 189 aa12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 EPGNQ6UW88 154 aa12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 C16orf47Q6ZP98 133 aaPredicted RBP12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 Q6ZSR9 355 aa12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 RNF175Q8N4F7 328 aa12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 GBP7Q8N8V2 638 aaPredicted RBP12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 AMER3Q8N944 861 aa12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 SIMC1Q8NDZ2 872 aa12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 METTL21AQ8WXB1 218 aa12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 C3orf30Q96M34 536 aa12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 MTERF1Q99551 399 aaKnown RBP12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 SIKE1Q9BRV8 207 aa12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 MS4A8Q9BY19 250 aa12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 AICDAQ9GZX7 198 aa12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 PTGDR2Q9Y5Y4 395 aa12.91□□□□□ -0.34
SHKBP1-218ENST00000598907 PHF3Q92576 2039 aaKnown RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms