RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ATXN8OSP0DMR3 200 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 HOXB9P17482 250 aaPredicted RBP14.29□□□□□ -0.12
TRIM28-209ENST00000597423 HTR1EP28566 365 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 CRATP43155 626 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 CDK9P50750 372 aaKnown RBP14.29□□□□□ -0.12
TRIM28-209ENST00000597423 MAP4K2Q12851 820 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 CEACAM7Q14002 265 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 COL9A2Q14055 689 aaPredicted RBP14.29□□□□□ -0.12
TRIM28-209ENST00000597423 NSDHLQ15738 373 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 CYP51A1Q16850 503 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 VWA2Q5GFL6 755 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 ZNF385CQ66K41 422 aaPredicted RBP14.29□□□□□ -0.12
TRIM28-209ENST00000597423 CPZQ66K79 652 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 TMEM107Q6UX40 140 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 IFNEQ86WN2 208 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 PROSER1Q86XN7 944 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 HPS6Q86YV9 775 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 OR2T12Q8NG77 320 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 OR10A6Q8NH74 314 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 ZNF675Q8TD23 568 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 ADAMTS14Q8WXS8 1223 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 POP5Q969H6 163 aaKnown RBP14.29□□□□□ -0.12
TRIM28-209ENST00000597423 MAGED4Q96JG8 741 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 CLPTM1LQ96KA5 538 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 SLC6A13Q9NSD5 602 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 SUCOQ9UBS9 1254 aaKnown RBP14.29□□□□□ -0.12
TRIM28-209ENST00000597423 SLC7A8Q9UHI5 535 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 FAF1Q9UNN5 650 aaPredicted RBP14.29□□□□□ -0.12
TRIM28-209ENST00000597423 ERVK-11Q9UQG0 969 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 PCDHGA8Q9Y5G5 932 aa14.29□□□□□ -0.12
TRIM28-209ENST00000597423 VSTM2BA6NLU5 285 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 DUXAA6NLW8 204 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 PCDH17O14917 1159 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 PLOD3O60568 738 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 COQ9O75208 318 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 FRYLO94915 3013 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 KCNK5O95279 499 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 AGR2O95994 175 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 TCN1P20061 433 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-209ENST00000597423 MAOAP21397 527 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 RBMS1P29558 406 aaKnown RBP14.28□□□□□ -0.12
TRIM28-209ENST00000597423 ETV5P41161 510 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 GSK3BP49841 420 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 PRKAG1P54619 331 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 EMP2P54851 167 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 GAB1Q13480 694 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 RGNQ15493 299 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 ZNF628Q5EBL2 1059 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 C3orf38Q5JPI3 329 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 SAXO2Q658L1 398 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 ZCCHC12Q6PEW1 402 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 COX15Q7KZN9 410 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 SZRD1Q7Z422 152 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 SLC30A8Q8IWU4 369 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 GALNT12Q8IXK2 581 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 RNF148Q8N7C7 305 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 NUP43Q8NFH3 380 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 KAT2AQ92830 837 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 DAZLQ92904 295 aaKnown RBP14.28□□□□□ -0.12
TRIM28-209ENST00000597423 UTP4Q969X6 686 aaKnown RBP14.28□□□□□ -0.12
TRIM28-209ENST00000597423 ASB9Q96DX5 294 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 AURKBQ96GD4 344 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-209ENST00000597423 REXO5Q96IC2 774 aaKnown RBP14.28□□□□□ -0.12
TRIM28-209ENST00000597423 LRGUKQ96M69 825 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 ZNF583Q96ND8 569 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 FAM117AQ9C073 453 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 NECTIN3Q9NQS3 549 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 SLC22A11Q9NSA0 550 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 SIRT3Q9NTG7 399 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-209ENST00000597423 SCN3AQ9NY46 2000 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 NTMQ9P121 344 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 RAPGEFL1Q9UHV5 662 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 C19orf53Q9UNZ5 99 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-209ENST00000597423 SATB2Q9UPW6 733 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 POMPQ9Y244 141 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 PADI2Q9Y2J8 665 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 PCDHGB3Q9Y5G1 929 aa14.28□□□□□ -0.12
TRIM28-209ENST00000597423 ZFHX2Q9C0A1 2572 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-209ENST00000597423 ELOVL7A1L3X0 281 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 FAM220BPB1ANY3 271 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 JRKO75564 520 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 TNFSF15O95150 251 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 ZNF28P17035 718 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 MATN1P21941 496 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 MC3RP41968 323 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 RHAGQ02094 409 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 RBBP4Q09028 425 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 GNA13Q14344 377 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 NKG7Q16617 165 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 PRICKLE4Q2TBC4 344 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 GCNT6Q5T4J0 391 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 DHFR2Q86XF0 187 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 RNF130Q86XS8 419 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 TMEM151BQ8IW70 566 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 OR2L13Q8N349 312 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 VWA5B2Q8N398 1253 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 ESX1Q8N693 406 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 GALNT6Q8NCL4 622 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 FAM13CQ8NE31 585 aa14.27□□□□□ -0.13
TRIM28-209ENST00000597423 ADCY4Q8NFM4 1077 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms