RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 AP3M1Q9Y2T2 418 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 PCDHGA8Q9Y5G5 932 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 GMEB1Q9Y692 573 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 IGKV3D-11A0A0A0MRZ8 115 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 TEX51A0A1B0GUA7 166 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 PRORSD1PA6NEY8 169 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 DNAJA2O60884 412 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 SLITRK5O94991 958 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 TNFSF15O95150 251 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 KRT75O95678 551 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 DLGAP3O95886 979 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 STT3AP46977 705 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 CCT3P49368 545 aaKnown RBP13.73□□□□□ -0.21
VRK3-212ENST00000596814 EEFSECP57772 596 aaKnown RBP13.73□□□□□ -0.21
VRK3-212ENST00000596814 CEACAM7Q14002 265 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 NKG7Q16617 165 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 ZNF628Q5EBL2 1059 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 PGM2L1Q6PCE3 622 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 FAM198BQ6UWH4 519 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 GPR155Q7Z3F1 870 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 HPS6Q86YV9 775 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 C7orf57Q8NEG2 295 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 ZNF675Q8TD23 568 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 KAT2AQ92830 837 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 TSLPQ969D9 159 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 CCDC124Q96CT7 223 aaKnown RBP13.73□□□□□ -0.21
VRK3-212ENST00000596814 ELP4Q96EB1 424 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 NEURL3Q96EH8 262 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 FAM120BQ96EK7 910 aaKnown RBP13.73□□□□□ -0.21
VRK3-212ENST00000596814 ECSITQ9BQ95 431 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 TMEM121BQ9BXQ6 578 aaPredicted RBP13.73□□□□□ -0.21
VRK3-212ENST00000596814 CHST8Q9H2A9 424 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 ALG2Q9H553 416 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 SOX17Q9H6I2 414 aaPredicted RBP13.73□□□□□ -0.21
VRK3-212ENST00000596814 KAT8Q9H7Z6 458 aaKnown RBP13.73□□□□□ -0.21
VRK3-212ENST00000596814 C3orf14Q9HBI5 128 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 ZCCHC3Q9NUD5 404 aaKnown RBP13.73□□□□□ -0.21
VRK3-212ENST00000596814 FOXJ2Q9P0K8 574 aa13.73□□□□□ -0.21
VRK3-212ENST00000596814 SYNDIG1LA6NDD5 238 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 VSTM2BA6NLU5 285 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 C1QCP02747 245 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 SDHBP21912 280 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 EFNA3P52797 238 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 GABREP78334 506 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 MRPS35P82673 323 aaKnown RBP13.72□□□□□ -0.21
VRK3-212ENST00000596814 PRR5P85299 388 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 LIPEQ05469 1076 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 DMTNQ08495 405 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 TP53BP2Q13625 1128 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 PRICKLE4Q2TBC4 344 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 SPATS1Q496A3 300 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 C6orf163Q5TEZ5 329 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 SAXO2Q658L1 398 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 MRPL14Q6P1L8 145 aaKnown RBP13.72□□□□□ -0.21
VRK3-212ENST00000596814 BHLHB9Q6PI77 547 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 C6orf15Q6UXA7 325 aaPredicted RBP13.72□□□□□ -0.21
VRK3-212ENST00000596814 ZNF517Q6ZMY9 492 aaPredicted RBP13.72□□□□□ -0.21
VRK3-212ENST00000596814 SHISA6Q6ZSJ9 500 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 LAPTM4BQ86VI4 370 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 MARCH9Q86YJ5 346 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 OR56A1Q8NGH5 318 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 OR10A6Q8NH74 314 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 PPWD1Q96BP3 646 aaKnown RBP13.72□□□□□ -0.21
VRK3-212ENST00000596814 RBM18Q96H35 190 aaKnown RBP13.72□□□□□ -0.21
VRK3-212ENST00000596814 MAGED4Q96JG8 741 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 SPSB2Q99619 263 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 RAD21L1Q9H4I0 556 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 EPS8L2Q9H6S3 715 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 WDR54Q9H977 334 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 AKIRIN1Q9H9L7 192 aaPredicted RBP13.72□□□□□ -0.21
VRK3-212ENST00000596814 DDX18Q9NVP1 670 aaKnown RBP13.72□□□□□ -0.21
VRK3-212ENST00000596814 DLL3Q9NYJ7 618 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 MAT2BQ9NZL9 334 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 PTGFRNQ9P2B2 879 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 CD300AQ9UGN4 299 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 SLC7A8Q9UHI5 535 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 NXT1Q9UKK6 140 aaKnown RBP13.72□□□□□ -0.21
VRK3-212ENST00000596814 SDK2Q58EX2 2172 aa13.72□□□□□ -0.21
VRK3-212ENST00000596814 CCDC88CQ9P219 2028 aa13.71□□□□□ -0.21
VRK3-212ENST00000596814 PLOD2O00469 737 aa13.71□□□□□ -0.21
VRK3-212ENST00000596814 EMC8O43402 210 aa13.71□□□□□ -0.21
VRK3-212ENST00000596814 CNOT3O75175 753 aaKnown RBP13.71□□□□□ -0.21
VRK3-212ENST00000596814 SORBS2O94875 1100 aaKnown RBP13.71□□□□□ -0.21
VRK3-212ENST00000596814 RECKO95980 971 aa13.71□□□□□ -0.21
VRK3-212ENST00000596814 IFNA16P05015 189 aa13.71□□□□□ -0.21
VRK3-212ENST00000596814 HEXBP07686 556 aa13.71□□□□□ -0.21
VRK3-212ENST00000596814 IFI6P09912 130 aa13.71□□□□□ -0.21
VRK3-212ENST00000596814 HSD17B1P14061 328 aa13.71□□□□□ -0.21
VRK3-212ENST00000596814 TCN1P20061 433 aaPredicted RBP13.71□□□□□ -0.21
VRK3-212ENST00000596814 ME2P23368 584 aa13.71□□□□□ -0.21
VRK3-212ENST00000596814 GSK3BP49841 420 aa13.71□□□□□ -0.21
VRK3-212ENST00000596814 VAC14Q08AM6 782 aa13.71□□□□□ -0.21
VRK3-212ENST00000596814 NSDHLQ15738 373 aa13.71□□□□□ -0.21
VRK3-212ENST00000596814 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.71□□□□□ -0.21
VRK3-212ENST00000596814 FAM199XQ6PEV8 388 aaPredicted RBP13.71□□□□□ -0.21
VRK3-212ENST00000596814 TMPRSS7Q7RTY8 843 aa13.71□□□□□ -0.21
VRK3-212ENST00000596814 RNF130Q86XS8 419 aa13.71□□□□□ -0.21
VRK3-212ENST00000596814 GALNT12Q8IXK2 581 aa13.71□□□□□ -0.21
VRK3-212ENST00000596814 FAM156AQ8NDB6 213 aa13.71□□□□□ -0.21
VRK3-212ENST00000596814 PLPP5Q8NEB5 264 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms