RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 RHBDF1Q96CC6 855 aa12.56□□□□□ -0.4
SHKBP1-208ENST00000595726 TRIM44Q96DX7 344 aaPredicted RBP12.56□□□□□ -0.4
SHKBP1-208ENST00000595726 WDYHV1Q96HA8 205 aa12.56□□□□□ -0.4
SHKBP1-208ENST00000595726 UBXN10Q96LJ8 280 aa12.56□□□□□ -0.4
SHKBP1-208ENST00000595726 CSF3RQ99062 836 aa12.56□□□□□ -0.4
SHKBP1-208ENST00000595726 QPCTLQ9NXS2 382 aa12.56□□□□□ -0.4
SHKBP1-208ENST00000595726 NINJ2Q9NZG7 142 aa12.56□□□□□ -0.4
SHKBP1-208ENST00000595726 VTI1BQ9UEU0 232 aa12.56□□□□□ -0.4
SHKBP1-208ENST00000595726 SLC22A14Q9Y267 594 aa12.56□□□□□ -0.4
SHKBP1-208ENST00000595726 MED12Q93074 2177 aa12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 NCF1BA6NI72 391 aaPredicted RBP12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 NCF1CA8MVU1 366 aaPredicted RBP12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 CYR61O00622 381 aa12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 SLC35E2BP0CK96 405 aa12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 NCF1P14598 390 aaPredicted RBP12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 RAB38P57729 211 aa12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 ATP6V0D1P61421 351 aa12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 REEP5Q00765 189 aa12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 FAM27E3Q08E93 113 aa12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 OR4D1Q15615 310 aa12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 MPEG1Q2M385 716 aa12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 C18orf21Q32NC0 220 aaPredicted RBP12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 KRTAP24-1Q3LI83 254 aa12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 GLE1Q53GS7 698 aaKnown RBP12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 TMPRSS11BQ86T26 416 aa12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 ZNF595Q8IYB9 648 aa12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 PM20D2Q8IYS1 436 aa12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 OR8K3Q8NH51 312 aa12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 DOK4Q8TEW6 326 aa12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 INTS12Q96CB8 462 aaKnown RBP12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 FAR2Q96K12 515 aa12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 FMO2Q99518 471 aa12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 TMEM79Q9BSE2 394 aa12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 DOHHQ9BU89 302 aa12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 UGT2B28Q9BY64 529 aa12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 CDC42EP4Q9H3Q1 356 aaKnown RBP12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 PELI2Q9HAT8 420 aa12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 YAE1D1Q9NRH1 226 aa12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 DYRK1BQ9Y463 629 aa12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 CHCHD2Q9Y6H1 151 aaPredicted RBP12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 DOCK7Q96N67 2140 aa12.55□□□□□ -0.4
SHKBP1-208ENST00000595726 A8MXE2 369 aa12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 CTNSO60931 367 aa12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 LDB3O75112 727 aa12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 WDR47O94967 919 aa12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 SERPINA6P08185 405 aa12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 HNRNPH1P31943 449 aaKnown RBP12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 PHBP35232 272 aa12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 GDF5P43026 501 aa12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 DLG1Q12959 904 aa12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 EIPR1Q53HC9 387 aa12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 BICRALQ6AI39 1079 aa12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 RAPH1Q70E73 1250 aa12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 GCNT2Q8N0V5 402 aa12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 CEP112Q8N8E3 955 aa12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 PDPRQ8NCN5 879 aa12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 OR14A16Q8NHC5 309 aa12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 ZNF721Q8TF20 911 aa12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 IFT81Q8WYA0 676 aa12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 SPACA9Q96E40 222 aaPredicted RBP12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 GNRHR2Q96P88 292 aa12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 FUT8Q9BYC5 575 aa12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 ACSS3Q9H6R3 686 aa12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 CALHM2Q9HA72 323 aa12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 CNOT11Q9UKZ1 510 aaKnown RBP12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 KCNE2Q9Y6J6 123 aa12.54□□□□□ -0.4
SHKBP1-208ENST00000595726 SVEP1Q4LDE5 3571 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 HMX2A2RU54 273 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 HRKO00198 91 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 TAPBPO15533 448 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 ERI3O43414 337 aaKnown RBP12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 TRIM3O75382 744 aaPredicted RBP12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 SOX30O94993 753 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 CRABP2P29373 138 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 GGT5P36269 586 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 CPOXP36551 454 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 MC3RP41968 323 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 PLA2G16P53816 162 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 STX4Q12846 297 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 SF3B4Q15427 424 aaKnown RBP eCLIP12.53□□□□□ -0.41e-6■■■■■ 60
SHKBP1-208ENST00000595726 FBXO48Q5FWF7 155 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 CDKL4Q5MAI5 379 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 WIPI1Q5MNZ9 446 aaPredicted RBP12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 NXPE4Q6UWF7 544 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 TMEM64Q6YI46 380 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 C20orf204Q6ZNR8 217 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 PLEKHM3Q6ZWE6 761 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 TBC1D1Q86TI0 1168 aaPredicted RBP12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 GPSM1Q86YR5 675 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 C9orf40Q8IXQ3 194 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 TCAIMQ8N3R3 496 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 ZNF441Q8N8Z8 693 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 IGFBPL1Q8WX77 278 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 MS4A6EQ96DS6 147 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 MRRFQ96E11 262 aaKnown RBP12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 QRFPRQ96P65 431 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 TUBA1CQ9BQE3 449 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 NPLQ9BXD5 320 aaPredicted RBP12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 TSPYL1Q9H0U9 437 aa12.53□□□□□ -0.4
SHKBP1-208ENST00000595726 WWOXQ9NZC7 414 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms