RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 CNOT3O75175 753 aaKnown RBP10.05□□□□□ -0.8
SS18-213ENST00000579640 ALOX12BO75342 701 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 KRT75O95678 551 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 IGHEP01854 428 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 IFNA16P05015 189 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 GSNP06396 782 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 SOAT1P35610 550 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 CDK9P50750 372 aaKnown RBP10.05□□□□□ -0.8
SS18-213ENST00000579640 PRR5P85299 388 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 MAP4K2Q12851 820 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 ELAVL1Q15717 326 aaKnown RBP10.05□□□□□ -0.8
SS18-213ENST00000579640 SPDYE7PQ495Y7 208 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 RUNDC3AQ59EK9 446 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 ZNF628Q5EBL2 1059 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 FAM199XQ6PEV8 388 aaPredicted RBP10.05□□□□□ -0.8
SS18-213ENST00000579640 LAPTM4BQ86VI4 370 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 GALNT12Q8IXK2 581 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 MSRB3Q8IXL7 192 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 PRSS58Q8IYP2 241 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 DEFB107AQ8IZN7 70 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 ARHGAP24Q8N264 748 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 OR56A1Q8NGH5 318 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 OR2Y1Q8NGV0 311 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 CT55Q8WUE5 264 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 TSLPQ969D9 159 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 ELP4Q96EB1 424 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 SLC35A5Q9BS91 424 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 CRB3Q9BUF7 120 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 GPR87Q9BY21 358 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 TRIM4Q9C037 500 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 RAD21L1Q9H4I0 556 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 SPAG4Q9NPE6 437 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 ADAP2Q9NPF8 381 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 SLC25A37Q9NYZ2 338 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 PTGFRNQ9P2B2 879 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 C19orf25Q9UFG5 118 aaPredicted RBP10.05□□□□□ -0.8
SS18-213ENST00000579640 C3orf18Q9UK00 162 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 PRPF19Q9UMS4 504 aaKnown RBP10.05□□□□□ -0.8
SS18-213ENST00000579640 ERVK-11Q9UQG0 969 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 SNX8Q9Y5X2 465 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 SDK2Q58EX2 2172 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 SPTBN4Q9H254 2564 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 RNF103-CHMP3A0A140T963 221 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 EVPLLA8MZ36 301 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 EMC8O43402 210 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 BRINP1O60477 761 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 PLOD3O60568 738 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 BCAS2O75934 225 aaPredicted RBP10.05□□□□□ -0.8
SS18-213ENST00000579640 DNAJC8O75937 253 aaPredicted RBP10.05□□□□□ -0.8
SS18-213ENST00000579640 TCN2P20062 427 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 SLC6A2P23975 617 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 FOLR3P41439 243 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 STAT5AP42229 794 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 MAGEA8P43361 318 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 CCT3P49368 545 aaKnown RBP10.05□□□□□ -0.8
SS18-213ENST00000579640 RPS15P62841 145 aaKnown RBP10.05□□□□□ -0.8
SS18-213ENST00000579640 TXNL4AP83876 142 aaKnown RBP10.05□□□□□ -0.8
SS18-213ENST00000579640 VAC14Q08AM6 782 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 FOXC1Q12948 553 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 GAB1Q13480 694 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 CAPRIN1Q14444 709 aaKnown RBP10.05□□□□□ -0.8
SS18-213ENST00000579640 PRICKLE4Q2TBC4 344 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 SPATS1Q496A3 300 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 GTDC1Q4AE62 458 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 NANOGP8Q6NSW7 305 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 TMEM205Q6UW68 189 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 TMEM107Q6UX40 140 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 ASRGL1Q7L266 308 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 ENDOVQ8N8Q3 282 aaKnown RBP10.05□□□□□ -0.8
SS18-213ENST00000579640 ZFP90Q8TF47 636 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 RIT1Q92963 219 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 CTHRC1Q96CG8 243 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 ART5Q96L15 291 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 MMADHCQ9H3L0 296 aaPredicted RBP10.05□□□□□ -0.8
SS18-213ENST00000579640 NANOGQ9H9S0 305 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 CXorf21Q9HAI6 301 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 TPT1P8Q9HAU6 139 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 SLC6A13Q9NSD5 602 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 MAT2BQ9NZL9 334 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 NTMQ9P121 344 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 ABCD2Q9UBJ2 740 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 FARSAQ9Y285 508 aaKnown RBP10.05□□□□□ -0.8
SS18-213ENST00000579640 PTRH2Q9Y3E5 179 aaKnown RBP10.05□□□□□ -0.8
SS18-213ENST00000579640 L3MBTL1Q9Y468 752 aa10.05□□□□□ -0.8
SS18-213ENST00000579640 OR2W5A6NFC9 320 aa10.04□□□□□ -0.8
SS18-213ENST00000579640 CLIC1O00299 241 aa10.04□□□□□ -0.8
SS18-213ENST00000579640 DNAJA2O60884 412 aa10.04□□□□□ -0.8
SS18-213ENST00000579640 KLF7O75840 302 aaPredicted RBP10.04□□□□□ -0.8
SS18-213ENST00000579640 TNNI3P19429 210 aa10.04□□□□□ -0.8
SS18-213ENST00000579640 CHI3L1P36222 383 aaPredicted RBP10.04□□□□□ -0.8
SS18-213ENST00000579640 MC3RP41968 323 aa10.04□□□□□ -0.8
SS18-213ENST00000579640 DNASE1L3Q13609 305 aa10.04□□□□□ -0.8
SS18-213ENST00000579640 LTB4RQ15722 352 aa10.04□□□□□ -0.8
SS18-213ENST00000579640 SAXO2Q658L1 398 aa10.04□□□□□ -0.8
SS18-213ENST00000579640 BNC2Q6ZN30 1099 aaPredicted RBP10.04□□□□□ -0.8
SS18-213ENST00000579640 SHISA6Q6ZSJ9 500 aa10.04□□□□□ -0.8
SS18-213ENST00000579640 DTX1Q86Y01 620 aa10.04□□□□□ -0.8
SS18-213ENST00000579640 OR2L13Q8N349 312 aa10.04□□□□□ -0.8
SS18-213ENST00000579640 VWA5B2Q8N398 1253 aa10.04□□□□□ -0.8
SS18-213ENST00000579640 ADCY4Q8NFM4 1077 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms