RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 CSNK2A2P19784 350 aaPredicted RBP13.72□□□□□ -0.21
SS18-212ENST00000579061 CNR1P21554 472 aa13.72□□□□□ -0.21
SS18-212ENST00000579061 TIA1P31483 386 aaKnown RBP eCLIP13.72□□□□□ -0.21
SS18-212ENST00000579061 CASP6P55212 293 aa13.72□□□□□ -0.21
SS18-212ENST00000579061 ZNF791Q3KP31 576 aaPredicted RBP13.72□□□□□ -0.21
SS18-212ENST00000579061 C1QL3Q5VWW1 255 aa13.72□□□□□ -0.21
SS18-212ENST00000579061 FAM219BQ5XKK7 198 aa13.72□□□□□ -0.21
SS18-212ENST00000579061 MTFR2Q6P444 385 aa13.72□□□□□ -0.21
SS18-212ENST00000579061 LYPD8Q6UX82 237 aa13.72□□□□□ -0.21
SS18-212ENST00000579061 RGS9BPQ6ZS82 235 aa13.72□□□□□ -0.21
SS18-212ENST00000579061 FJX1Q86VR8 437 aa13.72□□□□□ -0.21
SS18-212ENST00000579061 SPPL2CQ8IUH8 684 aa13.72□□□□□ -0.21
SS18-212ENST00000579061 SAMD14Q8IZD0 417 aaPredicted RBP13.72□□□□□ -0.21
SS18-212ENST00000579061 BANPQ8N9N5 519 aa13.72□□□□□ -0.21
SS18-212ENST00000579061 OR7G1Q8NGA0 311 aa13.72□□□□□ -0.21
SS18-212ENST00000579061 TP53INP1Q96A56 240 aa13.72□□□□□ -0.21
SS18-212ENST00000579061 APIPQ96GX9 242 aa13.72□□□□□ -0.21
SS18-212ENST00000579061 MAGED4Q96JG8 741 aa13.72□□□□□ -0.21
SS18-212ENST00000579061 TRMOQ9BU70 441 aa13.72□□□□□ -0.21
SS18-212ENST00000579061 SHCBP1LQ9BZQ2 653 aa13.72□□□□□ -0.21
SS18-212ENST00000579061 WWTR1Q9GZV5 400 aa13.72□□□□□ -0.21
SS18-212ENST00000579061 C12orf65Q9H3J6 166 aaKnown RBP13.72□□□□□ -0.21
SS18-212ENST00000579061 SACM1LQ9NTJ5 587 aa13.72□□□□□ -0.21
SS18-212ENST00000579061 DEPPQ9NTK1 212 aa13.72□□□□□ -0.21
SS18-212ENST00000579061 ZNF407Q9C0G0 2248 aa13.72□□□□□ -0.21
SS18-212ENST00000579061 TRGV8A0A0C4DH27 118 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 TFECO14948 347 aaPredicted RBP13.71□□□□□ -0.21
SS18-212ENST00000579061 SLC19A2O60779 497 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 TRIM13O60858 407 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 CT62P0C5K7 136 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 UROSP10746 265 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 NT5EP21589 574 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 SSTR4P31391 388 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 FOXA1P55317 472 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 GPR85P60893 370 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 RAE1P78406 368 aaKnown RBP13.71□□□□□ -0.21
SS18-212ENST00000579061 HMGCS1Q01581 520 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 MAP4K2Q12851 820 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 PCLAFQ15004 111 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 ZNF750Q32MQ0 723 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 GK5Q6ZS86 529 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 MAMDC2Q7Z304 686 aaPredicted RBP13.71□□□□□ -0.21
SS18-212ENST00000579061 TRIM46Q7Z4K8 759 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 TAGAPQ8N103 731 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 ZNF615Q8N8J6 731 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 ZNF441Q8N8Z8 693 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 C17orf47Q8NEP4 570 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 OR2M7Q8NG81 312 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 FAM76AQ8TAV0 307 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 SREK1Q8WXA9 508 aaKnown RBP13.71□□□□□ -0.21
SS18-212ENST00000579061 KLHL29Q96CT2 875 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 SPACA9Q96E40 222 aaPredicted RBP13.71□□□□□ -0.21
SS18-212ENST00000579061 METTL2AQ96IZ6 378 aaKnown RBP13.71□□□□□ -0.21
SS18-212ENST00000579061 GAL3ST4Q96RP7 486 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 FAM173AQ9BQD7 235 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 TSPAN10Q9H1Z9 355 aaPredicted RBP13.71□□□□□ -0.21
SS18-212ENST00000579061 OR10A5Q9H207 317 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 PLSCR2Q9NRY7 297 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 HEY2Q9UBP5 337 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 SUCOQ9UBS9 1254 aaKnown RBP13.71□□□□□ -0.21
SS18-212ENST00000579061 CFL2Q9Y281 166 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 DLGAP4Q9Y2H0 992 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 WBP11Q9Y2W2 641 aaKnown RBP13.71□□□□□ -0.21
SS18-212ENST00000579061 ZNF780BQ9Y6R6 833 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 NINQ8N4C6 2090 aa13.71□□□□□ -0.21
SS18-212ENST00000579061 EXPH5Q8NEV8 1989 aa13.71□□□□□ -0.22
SS18-212ENST00000579061 NCOA6Q14686 2063 aaPredicted RBP13.7□□□□□ -0.22
SS18-212ENST00000579061 C2orf92A0A1B0GVN3 265 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 GNG14A0A1W2PPG7 69 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 CAPN14A8MX76 684 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 NPIPB8E9PQR5 432 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 ACOT7O00154 380 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 CRCPO75575 148 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 ERAL1O75616 437 aaKnown RBP13.7□□□□□ -0.22
SS18-212ENST00000579061 RSL1D1O76021 490 aaKnown RBP13.7□□□□□ -0.22
SS18-212ENST00000579061 P04436 131 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 TUBBP07437 444 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 IL3P08700 152 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 FBXO45P0C2W1 286 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 S1PR1P21453 382 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 SERPINB3P29508 390 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 ALDH9A1P49189 494 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 MGAT2Q10469 447 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 HEPACAMQ14CZ8 416 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 ERCC6LQ2NKX8 1250 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 PRICKLE4Q2TBC4 344 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 HLA-DQA1Q5Y7H0 255 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 SLC22A10Q63ZE4 541 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 RNF165Q6ZSG1 346 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 C10orf107Q8IVU9 208 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 MMP21Q8N119 569 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 VWA5B2Q8N398 1253 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 DOK4Q8TEW6 326 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 PAQR8Q8TEZ7 354 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 C16orf78Q8WTQ4 265 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 CTHRC1Q96CG8 243 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 ZNF681Q96N22 645 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 GATA5Q9BWX5 397 aaPredicted RBP13.7□□□□□ -0.22
SS18-212ENST00000579061 PARD6BQ9BYG5 372 aa13.7□□□□□ -0.22
SS18-212ENST00000579061 SH2D2AQ9NP31 389 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms