RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 ZC3H7AQ8IWR0 971 aaKnown RBP12.83□□□□□ -0.36
CCDC40-209ENST00000573474 ST13P4Q8IZP2 240 aaPredicted RBP12.83□□□□□ -0.36
CCDC40-209ENST00000573474 C10orf111Q8N326 155 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 NUP43Q8NFH3 380 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 BHLHE22Q8NFJ8 381 aaPredicted RBP12.83□□□□□ -0.36
CCDC40-209ENST00000573474 ADCY4Q8NFM4 1077 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 ZNF675Q8TD23 568 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 KAT2AQ92830 837 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 STMN2Q93045 179 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 RBM18Q96H35 190 aaKnown RBP12.83□□□□□ -0.36
CCDC40-209ENST00000573474 MAGED4Q96JG8 741 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 LRGUKQ96M69 825 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 PELOQ9BRX2 385 aaKnown RBP12.83□□□□□ -0.36
CCDC40-209ENST00000573474 TGIF2Q9GZN2 237 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 CHST8Q9H2A9 424 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 SLC22A11Q9NSA0 550 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 GPATCH2Q9NW75 528 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 NTMQ9P121 344 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 PTGFRNQ9P2B2 879 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 MAGEL2Q9UJ55 1249 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 MUC6Q6W4X9 2439 aa12.83□□□□□ -0.36
CCDC40-209ENST00000573474 IGLV3-12A0A075B6K2 115 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 MYOCOSA0A1B0GUC4 107 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 TGFBR3LH3BV60 316 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 ARPC2O15144 300 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 TNFRSF21O75509 655 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 DKK1O94907 266 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 ATXN8OSP0DMR3 200 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 ETFAP13804 333 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 GGT1P19440 569 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 CSRP1P21291 193 aaKnown RBP12.82□□□□□ -0.36
CCDC40-209ENST00000573474 AGXTP21549 392 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 PTGER1P34995 402 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 RORAP35398 523 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 MC3RP41968 323 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 STT3AP46977 705 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 PRIM2P49643 509 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 ANXA11P50995 505 aaKnown RBP12.82□□□□□ -0.36
CCDC40-209ENST00000573474 MAPK10P53779 464 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 TXNL4AP83876 142 aaKnown RBP12.82□□□□□ -0.36
CCDC40-209ENST00000573474 OCA2Q04671 838 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 MAP4K2Q12851 820 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 ADRM1Q16186 407 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 VMACQ2NL98 169 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 ZNF628Q5EBL2 1059 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 GCNT6Q5T4J0 391 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 DCAF12Q5T6F0 453 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 ZNF385CQ66K41 422 aaPredicted RBP12.82□□□□□ -0.36
CCDC40-209ENST00000573474 LCN8Q6JVE9 175 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 QSOX2Q6ZRP7 698 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 COX15Q7KZN9 410 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 ASCL5Q7RTU5 278 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 SZRD1Q7Z422 152 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 PTOV1Q86YD1 416 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 ZZZ3Q8IYH5 903 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 OR2L13Q8N349 312 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 HIPK4Q8NE63 616 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 OR7G2Q8NG99 324 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 PPWD1Q96BP3 646 aaKnown RBP12.82□□□□□ -0.36
CCDC40-209ENST00000573474 SLC35G5Q96KT7 338 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 LRFN5Q96NI6 719 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 PTCHD1Q96NR3 888 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 DGAT2Q96PD7 388 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 ZPBPQ9BS86 351 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 TMEM121BQ9BXQ6 578 aaPredicted RBP12.82□□□□□ -0.36
CCDC40-209ENST00000573474 NECTIN3Q9NQS3 549 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 DDX18Q9NVP1 670 aaKnown RBP12.82□□□□□ -0.36
CCDC40-209ENST00000573474 THUMPD1Q9NXG2 353 aaKnown RBP12.82□□□□□ -0.36
CCDC40-209ENST00000573474 C19orf53Q9UNZ5 99 aaPredicted RBP12.82□□□□□ -0.36
CCDC40-209ENST00000573474 CLDN16Q9Y5I7 305 aa12.82□□□□□ -0.36
CCDC40-209ENST00000573474 NUP214P35658 2090 aaPredicted RBP12.81□□□□□ -0.36
CCDC40-209ENST00000573474 COL27A1Q8IZC6 1860 aaPredicted RBP12.81□□□□□ -0.36
CCDC40-209ENST00000573474 A0A087WV62 115 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 CCDC187A0A096LP49 1063 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 SYNDIG1LA6NDD5 238 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 AQP12BA6NM10 295 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 MEN1O00255 615 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 UPK1AO00322 258 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 CXCR6O00574 342 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 PLOD3O60568 738 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 FKBP6O75344 327 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 KLK3P07288 261 aaPredicted RBP12.81□□□□□ -0.36
CCDC40-209ENST00000573474 BMP2P12643 396 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 NCK1P16333 377 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 MAOAP21397 527 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 MATN1P21941 496 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 GALNSP34059 522 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 SOX11P35716 441 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 PRKAG1P54619 331 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 CASP9P55211 416 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 CLDN6P56747 220 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 RHAGQ02094 409 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 RBBP4Q09028 425 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 MGAT2Q10469 447 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 EIF3IQ13347 325 aaKnown RBP12.81□□□□□ -0.36
CCDC40-209ENST00000573474 VEZF1Q14119 521 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 PRICKLE4Q2TBC4 344 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 MINDY4Q4G0A6 757 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 VWA2Q5GFL6 755 aa12.81□□□□□ -0.36
CCDC40-209ENST00000573474 FHL5Q5TD97 284 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms