RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 SOX3P41225 446 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 ZNF91Q05481 1191 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 KHDRBS1Q07666 443 aaKnown RBP eCLIP21.53■■□□□ 1.04
VPS53-211ENST00000571805 SPHARQ15513 63 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 NDUFAF5Q5TEU4 345 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 RNLSQ5VYX0 342 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 ZNF793Q6ZN11 406 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 OLIG3Q7RTU3 272 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 SLC34A3Q8N130 599 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 CACTIN-AS1Q8N1I8 211 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 C12orf76Q8N812 135 aaPredicted RBP21.53■■□□□ 1.04
VPS53-211ENST00000571805 MIR1-1HGQ9H1L0 117 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 CKAP5Q14008 2032 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 KMOO15229 486 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 CLEC3AO75596 197 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 EPPINO95925 133 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 POU2F2P09086 479 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 DRD2P14416 443 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 TAS2R38P59533 333 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 ALDH6A1Q02252 535 aaKnown RBP21.53■■□□□ 1.04
VPS53-211ENST00000571805 UBE3AQ05086 875 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 MLF2Q15773 248 aaPredicted RBP21.53■■□□□ 1.04
VPS53-211ENST00000571805 NANOGP1Q8N7R0 232 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 KCNS3Q9BQ31 491 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 C17orf62Q9BQA9 187 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 CNPPD1Q9BV87 410 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 KCNK12Q9HB15 430 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 MYO10Q9HD67 2058 aa21.53■■□□□ 1.04
VPS53-211ENST00000571805 DOCK9Q9BZ29 2069 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 PNMA8CA0A1B0GUJ8 204 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 LRIT2A6NDA9 550 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 UGT2B17O75795 530 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 DLGAP3O95886 979 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 EPHX1P07099 455 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 NR2F1P10589 423 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 TNNI3P19429 210 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 DRD3P35462 400 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 PRDX1Q06830 199 aaKnown RBP21.52■■□□□ 1.04
VPS53-211ENST00000571805 SPANXN2Q5MJ10 180 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 CD300LDQ6UXZ3 194 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 IL17RCQ8NAC3 791 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 SMG7Q92540 1137 aaKnown RBP21.52■■□□□ 1.04
VPS53-211ENST00000571805 TXNDC15Q96J42 360 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 INSM2Q96T92 566 aaPredicted RBP21.52■■□□□ 1.04
VPS53-211ENST00000571805 TSSK6Q9BXA6 273 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 SLC35C2Q9NQQ7 365 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 MBNL1Q9NR56 388 aaKnown RBP21.52■■□□□ 1.04
VPS53-211ENST00000571805 MAN2C1Q9NTJ4 1040 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 ZBTB32Q9Y2Y4 487 aaPredicted RBP21.52■■□□□ 1.04
VPS53-211ENST00000571805 MN1Q10571 1320 aaPredicted RBP21.52■■□□□ 1.04
VPS53-211ENST00000571805 SERPIND1P05546 499 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 HBQ1P09105 142 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 MAGP20916 626 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 RPS19P39019 145 aaKnown RBP21.52■■□□□ 1.04
VPS53-211ENST00000571805 CRYBB2P43320 205 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 ZER1Q7Z7L7 766 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 IQCF1Q8N6M8 205 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 OR2A1Q8NGT9 310 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 ASB16Q96NS5 453 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 FERD3LQ96RJ6 166 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 ASPNQ9BXN1 380 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 TEX101Q9BY14 249 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 KLHL31Q9H511 634 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 EHD3Q9NZN3 535 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 TRPC4Q9UBN4 977 aa21.52■■□□□ 1.04
VPS53-211ENST00000571805 TBC1D3BA6NDS4 549 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 NME6O75414 186 aaPredicted RBP21.51■■□□□ 1.03
VPS53-211ENST00000571805 MMP11P24347 488 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 SSR2P43308 183 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 GDPGP1Q6ZNW5 385 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 GDPD3Q7L5L3 318 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 SZRD1Q7Z422 152 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 FAM26EQ8N5C1 309 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 MND1Q9BWT6 205 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 BARHL1Q9BZE3 327 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 RACGAP1Q9H0H5 632 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 ZCCHC3Q9NUD5 404 aaKnown RBP21.51■■□□□ 1.03
VPS53-211ENST00000571805 TVP23BQ9NYZ1 205 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 ACSL5Q9ULC5 683 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 OR1A2Q9Y585 309 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 MAN2B1O00754 1011 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 PRKYO43930 277 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 PRKRAO75569 313 aaKnown RBP21.51■■□□□ 1.03
VPS53-211ENST00000571805 GPC1P35052 558 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 TPTEP56180 551 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 LSM11P83369 360 aaKnown RBP eCLIP21.51■■□□□ 1.03
VPS53-211ENST00000571805 GPR19Q15760 415 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 DESI1Q6ICB0 168 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 ADCK2Q7Z695 626 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 KRT73Q86Y46 540 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 PROKR2Q8NFJ6 384 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 OTUB1Q96FW1 271 aaPredicted RBP21.51■■□□□ 1.03
VPS53-211ENST00000571805 TRMT61AQ96FX7 289 aaKnown RBP21.51■■□□□ 1.03
VPS53-211ENST00000571805 POLDIP3Q9BY77 421 aaKnown RBP21.51■■□□□ 1.03
VPS53-211ENST00000571805 XKR8Q9H6D3 395 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 BCL2L10Q9HD36 194 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 ZSCAN32Q9NX65 697 aa21.51■■□□□ 1.03
VPS53-211ENST00000571805 LOC110117498-PIK3R3F6TDL0 507 aa21.5■■□□□ 1.03
VPS53-211ENST00000571805 TPST2O60704 377 aa21.5■■□□□ 1.03
VPS53-211ENST00000571805 FUT5Q11128 374 aa21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms