RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 GNB5O14775 395 aa16.32■□□□□ 0.2
CLK3-227ENST00000570296 EMC8O43402 210 aa16.32■□□□□ 0.2
CLK3-227ENST00000570296 OR10H2O60403 315 aa16.32■□□□□ 0.2
CLK3-227ENST00000570296 LMX1BO60663 402 aa16.32■□□□□ 0.2
CLK3-227ENST00000570296 CGAP01215 116 aa16.32■□□□□ 0.2
CLK3-227ENST00000570296 TMED10P49755 219 aaKnown RBP16.32■□□□□ 0.2
CLK3-227ENST00000570296 LHX2P50458 406 aa16.32■□□□□ 0.2
CLK3-227ENST00000570296 GPS1Q13098 491 aa16.32■□□□□ 0.2
CLK3-227ENST00000570296 EBPQ15125 230 aaKnown RBP16.32■□□□□ 0.2
CLK3-227ENST00000570296 OASLQ15646 514 aaKnown RBP16.32■□□□□ 0.2
CLK3-227ENST00000570296 KBTBD12Q3ZCT8 623 aa16.32■□□□□ 0.2
CLK3-227ENST00000570296 CYB5R2Q6BCY4 276 aa16.32■□□□□ 0.2
CLK3-227ENST00000570296 ABHD17CQ6PCB6 329 aa16.32■□□□□ 0.2
CLK3-227ENST00000570296 SBSNQ6UWP8 590 aa16.32■□□□□ 0.2
CLK3-227ENST00000570296 TRIM42Q8IWZ5 723 aa16.32■□□□□ 0.2
CLK3-227ENST00000570296 ARIH2OSQ8N7S6 290 aa16.32■□□□□ 0.2
CLK3-227ENST00000570296 ATG4AQ8WYN0 398 aa16.32■□□□□ 0.2
CLK3-227ENST00000570296 CCT6BQ92526 530 aa16.32■□□□□ 0.2
CLK3-227ENST00000570296 CALR3Q96L12 384 aaKnown RBP16.32■□□□□ 0.2
CLK3-227ENST00000570296 GBP4Q96PP9 640 aa16.32■□□□□ 0.2
CLK3-227ENST00000570296 TRIM54Q9BYV2 358 aa16.32■□□□□ 0.2
CLK3-227ENST00000570296 KLHL4Q9C0H6 718 aa16.32■□□□□ 0.2
CLK3-227ENST00000570296 OR2B2Q9GZK3 357 aa16.32■□□□□ 0.2
CLK3-227ENST00000570296 REXO4Q9GZR2 422 aaKnown RBP16.32■□□□□ 0.2
CLK3-227ENST00000570296 PAK5Q9P286 719 aa16.32■□□□□ 0.2
CLK3-227ENST00000570296 MAGED1Q9Y5V3 778 aaPredicted RBP16.32■□□□□ 0.2
CLK3-227ENST00000570296 IQANK1A0A1B0GTG1 560 aa16.31■□□□□ 0.2
CLK3-227ENST00000570296 OR6C76A6NM76 312 aa16.31■□□□□ 0.2
CLK3-227ENST00000570296 CDC7O00311 574 aa16.31■□□□□ 0.2
CLK3-227ENST00000570296 F7P08709 466 aaPredicted RBP16.31■□□□□ 0.2
CLK3-227ENST00000570296 GFRA1P56159 465 aa16.31■□□□□ 0.2
CLK3-227ENST00000570296 BIKQ13323 160 aa16.31■□□□□ 0.2
CLK3-227ENST00000570296 SQLEQ14534 574 aa16.31■□□□□ 0.2
CLK3-227ENST00000570296 ARMC3Q5W041 872 aa16.31■□□□□ 0.2
CLK3-227ENST00000570296 RNF111Q6ZNA4 994 aa16.31■□□□□ 0.2
CLK3-227ENST00000570296 DENND6AQ8IWF6 608 aa16.31■□□□□ 0.2
CLK3-227ENST00000570296 OR14L1PQ8NHC6 308 aa16.31■□□□□ 0.2
CLK3-227ENST00000570296 RBM18Q96H35 190 aaKnown RBP16.31■□□□□ 0.2
CLK3-227ENST00000570296 L2HGDHQ9H9P8 463 aa16.31■□□□□ 0.2
CLK3-227ENST00000570296 SNX15Q9NRS6 342 aa16.31■□□□□ 0.2
CLK3-227ENST00000570296 DTX4Q9Y2E6 619 aa16.31■□□□□ 0.2
CLK3-227ENST00000570296 KCNE2Q9Y6J6 123 aa16.31■□□□□ 0.2
CLK3-227ENST00000570296 A0A0G2JK05 382 aa16.3■□□□□ 0.2
CLK3-227ENST00000570296 TCRBV7S2A1N4TA0A589 114 aa16.3■□□□□ 0.2
CLK3-227ENST00000570296 SLC22A20A6NK97 555 aa16.3■□□□□ 0.2
CLK3-227ENST00000570296 CLEC3AO75596 197 aa16.3■□□□□ 0.2
CLK3-227ENST00000570296 TPM1P09493 284 aa16.3■□□□□ 0.2
CLK3-227ENST00000570296 ETS1P14921 441 aa16.3■□□□□ 0.2
CLK3-227ENST00000570296 ZNF708P17019 499 aa16.3■□□□□ 0.2
CLK3-227ENST00000570296 IGFBP5P24593 272 aa16.3■□□□□ 0.2
CLK3-227ENST00000570296 CLDN18P56856 261 aa16.3■□□□□ 0.2
CLK3-227ENST00000570296 PLIN5Q00G26 463 aa16.3■□□□□ 0.2
CLK3-227ENST00000570296 PCDH1Q08174 1060 aa16.3■□□□□ 0.2
CLK3-227ENST00000570296 AAGABQ6PD74 315 aa16.3■□□□□ 0.2
CLK3-227ENST00000570296 ANGPTL8Q6UXH0 198 aa16.3■□□□□ 0.2
CLK3-227ENST00000570296 TMIGD1Q6UXZ0 262 aa16.3■□□□□ 0.2
CLK3-227ENST00000570296 TMEM64Q6YI46 380 aa16.3■□□□□ 0.2
CLK3-227ENST00000570296 PRUNE1Q86TP1 453 aa16.3■□□□□ 0.2
CLK3-227ENST00000570296 THOC6Q86W42 341 aaKnown RBP16.3■□□□□ 0.2
CLK3-227ENST00000570296 IFNEQ86WN2 208 aa16.3■□□□□ 0.2
CLK3-227ENST00000570296 ZNF610Q8N9Z0 462 aa16.3■□□□□ 0.2
CLK3-227ENST00000570296 OR10H5Q8NGA6 315 aa16.3■□□□□ 0.2
CLK3-227ENST00000570296 SMAP2Q8WU79 429 aaPredicted RBP16.3■□□□□ 0.2
CLK3-227ENST00000570296 TP53INP1Q96A56 240 aa16.3■□□□□ 0.2
CLK3-227ENST00000570296 TFR2Q9UP52 801 aa16.3■□□□□ 0.2
CLK3-227ENST00000570296 SPACA6W5XKT8 324 aa16.3■□□□□ 0.2
CLK3-227ENST00000570296 FAM234BA2RU67 622 aa16.29■□□□□ 0.2
CLK3-227ENST00000570296 GOLGA6L22H0YM25 854 aa16.29■□□□□ 0.2
CLK3-227ENST00000570296 LIASO43766 372 aa16.29■□□□□ 0.2
CLK3-227ENST00000570296 FGF17O60258 216 aa16.29■□□□□ 0.2
CLK3-227ENST00000570296 DLX3O60479 287 aa16.29■□□□□ 0.2
CLK3-227ENST00000570296 ABCB7O75027 752 aa16.29■□□□□ 0.2
CLK3-227ENST00000570296 NDUFS7O75251 213 aa16.29■□□□□ 0.2
CLK3-227ENST00000570296 TPM3P06753 285 aa16.29■□□□□ 0.2
CLK3-227ENST00000570296 RHOXF2BP0C7M4 288 aa16.29■□□□□ 0.2
CLK3-227ENST00000570296 ZNF16P17020 682 aaPredicted RBP16.29■□□□□ 0.2
CLK3-227ENST00000570296 HNF1AP20823 631 aa16.29■□□□□ 0.2
CLK3-227ENST00000570296 STARP49675 285 aa16.29■□□□□ 0.2
CLK3-227ENST00000570296 SLC37A1P57057 533 aa16.29■□□□□ 0.2
CLK3-227ENST00000570296 SIRPAP78324 504 aa16.29■□□□□ 0.2
CLK3-227ENST00000570296 TGM3Q08188 693 aa16.29■□□□□ 0.2
CLK3-227ENST00000570296 THOC5Q13769 683 aaKnown RBP16.29■□□□□ 0.2
CLK3-227ENST00000570296 DGAT2L6Q6ZPD8 337 aa16.29■□□□□ 0.2
CLK3-227ENST00000570296 CCDC89Q8N998 374 aa16.29■□□□□ 0.2
CLK3-227ENST00000570296 LILRB1Q8NHL6 650 aaPredicted RBP16.29■□□□□ 0.2
CLK3-227ENST00000570296 ANKRD7Q92527 254 aa16.29■□□□□ 0.2
CLK3-227ENST00000570296 FRMD8P1Q9BZ68 369 aaPredicted RBP16.29■□□□□ 0.2
CLK3-227ENST00000570296 TSGA10Q9BZW7 698 aa16.29■□□□□ 0.2
CLK3-227ENST00000570296 ROGDIQ9GZN7 287 aa16.29■□□□□ 0.2
CLK3-227ENST00000570296 ACTR8Q9H981 624 aa16.29■□□□□ 0.2
CLK3-227ENST00000570296 HEY2Q9UBP5 337 aa16.29■□□□□ 0.2
CLK3-227ENST00000570296 CADP27708 2225 aa16.29■□□□□ 0.2
CLK3-227ENST00000570296 A0A1W2PP18 115 aa16.28■□□□□ 0.2
CLK3-227ENST00000570296 ELOA3DA6NLF2 546 aaPredicted RBP16.28■□□□□ 0.2
CLK3-227ENST00000570296 MFAP3LO75121 409 aa16.28■□□□□ 0.2
CLK3-227ENST00000570296 H2AFYO75367 372 aaKnown RBP16.28■□□□□ 0.2
CLK3-227ENST00000570296 TBX6O95947 436 aaPredicted RBP16.28■□□□□ 0.2
CLK3-227ENST00000570296 SLC1A2P43004 574 aa16.28■□□□□ 0.2
CLK3-227ENST00000570296 DSCR9P59020 149 aa16.28■□□□□ 0.2
CLK3-227ENST00000570296 HERVK_113P63132 956 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms