RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 DCAF12Q5T6F0 453 aa1.92□□□□□ -2.1
VPS35-207ENST00000568191 ZCCHC12Q6PEW1 402 aa1.92□□□□□ -2.1
VPS35-207ENST00000568191 PP632Q6XCG6 107 aa1.92□□□□□ -2.1
VPS35-207ENST00000568191 GALNTL5Q7Z4T8 443 aa1.92□□□□□ -2.1
VPS35-207ENST00000568191 GPR137CQ8N3F9 429 aa1.92□□□□□ -2.1
VPS35-207ENST00000568191 OR13F1Q8NGS4 319 aa1.92□□□□□ -2.1
VPS35-207ENST00000568191 SPATA18Q8TC71 538 aa1.92□□□□□ -2.1
VPS35-207ENST00000568191 PRCCQ92733 491 aaPredicted RBP1.92□□□□□ -2.1
VPS35-207ENST00000568191 FRAT1Q92837 279 aaPredicted RBP1.92□□□□□ -2.1
VPS35-207ENST00000568191 FAM46BQ96A09 425 aa1.92□□□□□ -2.1
VPS35-207ENST00000568191 PCED1BQ96HM7 432 aa1.92□□□□□ -2.1
VPS35-207ENST00000568191 KIR2DL4Q99706 377 aa1.92□□□□□ -2.1
VPS35-207ENST00000568191 SRD5A3Q9H8P0 318 aa1.92□□□□□ -2.1
VPS35-207ENST00000568191 TMEM161AQ9NX61 479 aa1.92□□□□□ -2.1
VPS35-207ENST00000568191 PRODH2Q9UF12 536 aa1.92□□□□□ -2.1
VPS35-207ENST00000568191 OR1A2Q9Y585 309 aa1.92□□□□□ -2.1
VPS35-207ENST00000568191 ARHGAP23Q9P227 1491 aa1.92□□□□□ -2.1
VPS35-207ENST00000568191 FGD5Q6ZNL6 1462 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 GTPBP10A4D1E9 387 aaKnown RBP1.91□□□□□ -2.1
VPS35-207ENST00000568191 HMGB1P1B2RPK0 211 aaPredicted RBP1.91□□□□□ -2.1
VPS35-207ENST00000568191 K7ERI5 159 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 IFIT3O14879 490 aaKnown RBP1.91□□□□□ -2.1
VPS35-207ENST00000568191 KRTAP5-8O75690 187 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 SERF1AO75920 110 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 SIX3O95343 332 aaPredicted RBP1.91□□□□□ -2.1
VPS35-207ENST00000568191 NUDT17P0C025 328 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 CPN1P15169 458 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 B4GALT1P15291 398 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 MDKP21741 143 aaPredicted RBP1.91□□□□□ -2.1
VPS35-207ENST00000568191 XCR1P46094 333 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 MTIF2P46199 727 aaKnown RBP1.91□□□□□ -2.1
VPS35-207ENST00000568191 SLC26A2P50443 739 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 SLC12A3P55017 1021 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 MFGE8Q08431 387 aaPredicted RBP1.91□□□□□ -2.1
VPS35-207ENST00000568191 NFE2L1Q14494 772 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 MEF2DQ14814 521 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 SPHARQ15513 63 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 WSCD2Q2TBF2 565 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 ZNF658BQ4V348 819 aaPredicted RBP1.91□□□□□ -2.1
VPS35-207ENST00000568191 UNC50Q53HI1 259 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 LRRC38Q5VT99 294 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 SLC22A10Q63ZE4 541 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 Q6ZRG5 221 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 Q8N9L7 120 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 ZNF564Q8TBZ8 553 aaPredicted RBP1.91□□□□□ -2.1
VPS35-207ENST00000568191 CRYGNQ8WXF5 182 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 FAM162AQ96A26 154 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 C16orf74Q96GX8 76 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 EDEM3Q9BZQ6 932 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 TRIM9Q9C026 710 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 Q9HAA7 133 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 GDF3Q9NR23 364 aa1.91□□□□□ -2.1
VPS35-207ENST00000568191 ARMCX3Q9UH62 379 aaPredicted RBP1.91□□□□□ -2.1
VPS35-207ENST00000568191 CFAP65Q6ZU64 1925 aaKnown RBP1.9□□□□□ -2.11
VPS35-207ENST00000568191 A0A087X0K7 114 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 ATP6AP2A0A1C7CYW4 349 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 FAM149AA5PLN7 773 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 MEI4A8MW99 385 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 RSPH10B2B2RC85 870 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 SLC30A4O14863 429 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 CHUKO15111 745 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 CRCPO75575 148 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 ASNSP08243 561 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 ALOX5P09917 674 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 H2AFZP0C0S5 128 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 SBK2P0C263 348 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 RSPH10BP0C881 870 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 LAMP1P11279 417 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 CPA3P15088 417 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 GLRA1P23415 457 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 SERPINB6P35237 376 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 NT5C2P49902 561 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 ARHGAP1Q07960 439 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 P2RY14Q15391 338 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 TRADDQ15628 312 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 CCDC158Q5M9N0 1113 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 ACER2Q5QJU3 275 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 FAM219BQ5XKK7 198 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 OTPQ5XKR4 325 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 WDR25Q64LD2 544 aaPredicted RBP1.9□□□□□ -2.11
VPS35-207ENST00000568191 ZNF544Q6NX49 715 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 PET117Q6UWS5 81 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 MFSD7Q6UXD7 560 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 MSANTD1Q6ZTZ1 278 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 MOB2Q70IA6 237 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 PRSS48Q7RTY5 328 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 ASPGQ86U10 573 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 MKXQ8IYA7 352 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 THEM5Q8N1Q8 247 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 FBXW8Q8N3Y1 598 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 NFAM1Q8NET5 270 aaPredicted RBP1.9□□□□□ -2.11
VPS35-207ENST00000568191 GOT1L1Q8NHS2 421 aaPredicted RBP1.9□□□□□ -2.11
VPS35-207ENST00000568191 DEPDC1BQ8WUY9 529 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 SNRNP40Q96DI7 357 aaKnown RBP1.9□□□□□ -2.11
VPS35-207ENST00000568191 CDKN2AIPNLQ96HQ2 116 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 CCDC114Q96M63 670 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 C9orf85Q96MD7 179 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 PRAM1Q96QH2 718 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 PANX3Q96QZ0 392 aa1.9□□□□□ -2.11
VPS35-207ENST00000568191 S1PR3Q99500 378 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms