RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 ITCHQ96J02 903 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 MARK4Q96L34 752 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 ZNF681Q96N22 645 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 CXorf21Q9HAI6 301 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 NEUROD4Q9HD90 331 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 SAR1AQ9NR31 198 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 C5AR2Q9P296 337 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 PRODH2Q9UF12 536 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 BTNL2Q9UIR0 455 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 FBXL4Q9UKA2 621 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 EXO1Q9UQ84 846 aaKnown RBP8.63□□□□□ -1.03
LDLR-210ENST00000559340 CAPN7Q9Y6W3 813 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 AKAP13Q12802 2813 aa8.63□□□□□ -1.03
LDLR-210ENST00000559340 FASNP49327 2511 aaKnown RBP8.62□□□□□ -1.03
LDLR-210ENST00000559340 ANKRD11Q6UB99 2663 aaPredicted RBP8.62□□□□□ -1.03
LDLR-210ENST00000559340 A0A087WV62 115 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 OR2W5A6NFC9 320 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 CCDC154A6NI56 674 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 TTC36A6NLP5 189 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 OR6C76A6NM76 312 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 WASHC1A8K0Z3 465 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 K7ENP7 123 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 PLOD2O00469 737 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 CDK2AP1O14519 115 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 FCHO1O14526 889 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 COQ9O75208 318 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 ZFAND5O76080 213 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 SEC24DO94855 1032 aaPredicted RBP8.62□□□□□ -1.03
LDLR-210ENST00000559340 CPSF4O95639 269 aaKnown RBP8.62□□□□□ -1.03
LDLR-210ENST00000559340 SNRPB2P08579 225 aaKnown RBP8.62□□□□□ -1.03
LDLR-210ENST00000559340 PRKAR1AP10644 381 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 COX6A1P12074 109 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 FRKP42685 505 aaPredicted RBP8.62□□□□□ -1.03
LDLR-210ENST00000559340 TRPC1P48995 793 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 PGDP52209 483 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 SLC26A5P58743 744 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 PRR5P85299 388 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 STX5Q13190 355 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 IL10RAQ13651 578 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 ATP1A4Q13733 1029 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 ZNF267Q14586 743 aaPredicted RBP8.62□□□□□ -1.03
LDLR-210ENST00000559340 PCOLCEQ15113 449 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 MAPKAPK3Q16644 382 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 COL28A1Q2UY09 1125 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 BTBD16Q32M84 506 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 SPANXN4Q5MJ08 99 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 DCAF10Q5QP82 559 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 HLA-DQA1Q5Y7H0 255 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 PLAG1Q6DJT9 500 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 OR4F3Q6IEY1 312 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 ANKRD26P1Q6NSI1 321 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 INO80CQ6PI98 192 aaPredicted RBP8.62□□□□□ -1.03
LDLR-210ENST00000559340 BLOC1S3Q6QNY0 202 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 RNF111Q6ZNA4 994 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 MTDHQ86UE4 582 aaKnown RBP8.62□□□□□ -1.03
LDLR-210ENST00000559340 MMP21Q8N119 569 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 OR5L2Q8NGL0 311 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 OR1N1Q8NGS0 311 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 PPWD1Q96BP3 646 aaKnown RBP8.62□□□□□ -1.03
LDLR-210ENST00000559340 C8orf44Q96CB5 159 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 SPDL1Q96EA4 605 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 SENP5Q96HI0 755 aaPredicted RBP8.62□□□□□ -1.03
LDLR-210ENST00000559340 FBXL20Q96IG2 436 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 IMMP1LQ96LU5 166 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 AMDHD1Q96NU7 426 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 LRRC37BQ96QE4 947 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 SLC25A23Q9BV35 468 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 CNPPD1Q9BV87 410 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 OR8D2Q9GZM6 311 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 GLIPR2Q9H4G4 154 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 MMP25Q9NPA2 562 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 CCDC167Q9P0B6 97 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 PTGFRNQ9P2B2 879 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 TEKT2Q9UIF3 430 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 PPIEQ9UNP9 301 aaKnown RBP8.62□□□□□ -1.03
LDLR-210ENST00000559340 NDUFAF1Q9Y375 327 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 CLDN16Q9Y5I7 305 aa8.62□□□□□ -1.03
LDLR-210ENST00000559340 NINQ8N4C6 2090 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 MYOCOSA0A1B0GUC4 107 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 A0A1W2PP18 115 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 BBIP1A8MTZ0 92 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 TGFBR3LH3BV60 316 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 NR5A2O00482 541 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 ANGPT2O15123 496 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 EMC8O43402 210 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 PLOD3O60568 738 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 PRAMEF2O60811 474 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 ANP32DO95626 131 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 SERPINA7P05543 415 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 KRT16P08779 473 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 ANXA11P50995 505 aaKnown RBP8.61□□□□□ -1.03
LDLR-210ENST00000559340 SOX8P57073 446 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 DCAF7P61962 342 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 PSPHP78330 225 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 TXNL4AP83876 142 aaKnown RBP8.61□□□□□ -1.03
LDLR-210ENST00000559340 FUT7Q11130 342 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 HSPB3Q12988 150 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 KLF10Q13118 480 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 TP53BP2Q13625 1128 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 PRICKLE4Q2TBC4 344 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms