RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 NUDT16L1Q9BRJ7 211 aaKnown RBP2.74□□□□□ -1.97
VPS13C-208ENST00000559119 SCRT1Q9BWW7 348 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 TSPY26PQ9H489 355 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 IL1RL2Q9HB29 575 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 EIF3KQ9UBQ5 218 aaKnown RBP2.74□□□□□ -1.97
VPS13C-208ENST00000559119 KIF14Q15058 1648 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 ANKRD36BQ8N2N9 1353 aa2.74□□□□□ -1.97
VPS13C-208ENST00000559119 PRDM2Q13029 1718 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 MEGF6O75095 1541 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 ARHGEF12Q9NZN5 1544 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 ARHGAP23Q9P227 1491 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 IGHV3OR16-12A0A075B7B8 117 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 A0A1B0GUL7 405 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 SLC15A5A6NIM6 579 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 A8MX80 341 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 FIBPO43427 364 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 SSR1P43307 286 aaKnown RBP2.73□□□□□ -1.97
VPS13C-208ENST00000559119 ARHGDIAP52565 204 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 TPM4P67936 248 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 LRRC63Q05C16 580 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 CD47Q08722 323 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 COG2Q14746 738 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 QRICH1Q2TAL8 776 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 CFAP161Q6P656 301 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 BRINP3Q76B58 766 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 DNAJB7Q7Z6W7 309 aaPredicted RBP2.73□□□□□ -1.97
VPS13C-208ENST00000559119 ZNF677Q86XU0 584 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 Q8N9G6 341 aaPredicted RBP2.73□□□□□ -1.97
VPS13C-208ENST00000559119 ICA1LQ8NDH6 482 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 KIR2DL5BQ8NHK3 375 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 RMDN1Q96DB5 314 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 KIR2DL4Q99706 377 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 PRODH2Q9UF12 536 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 TTLL3Q9Y4R7 772 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 ETV7Q9Y603 341 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 REREQ9P2R6 1566 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 ABCC2Q92887 1545 aa2.73□□□□□ -1.97
VPS13C-208ENST00000559119 GRIN2AQ12879 1464 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 PLB1Q6P1J6 1458 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 SHROOM2Q13796 1616 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 CCDC188H7C350 402 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 CCSO14618 274 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 EMC8O43402 210 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 HTATSF1O43719 755 aaKnown RBP2.72□□□□□ -1.97
VPS13C-208ENST00000559119 CSO75390 466 aaKnown RBP2.72□□□□□ -1.97
VPS13C-208ENST00000559119 PIK3C2GO75747 1445 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 PCF11O94913 1555 aaKnown RBP2.72□□□□□ -1.97
VPS13C-208ENST00000559119 IVLP07476 585 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 SNRPCP09234 159 aaKnown RBP2.72□□□□□ -1.97
VPS13C-208ENST00000559119 SBK2P0C263 348 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 LAMP1P11279 417 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 NEFHP12036 1026 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 RPL27P61353 136 aaKnown RBP2.72□□□□□ -1.97
VPS13C-208ENST00000559119 NUCB1Q02818 461 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 TEFQ10587 303 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 SHHQ15465 462 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 HYAL4Q2M3T9 481 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 WDR25Q64LD2 544 aaPredicted RBP2.72□□□□□ -1.97
VPS13C-208ENST00000559119 TXNRD3NBQ6F5E7 133 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 ENOSF1Q7L5Y1 443 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 CCAR2Q8N163 923 aaKnown RBP2.72□□□□□ -1.97
VPS13C-208ENST00000559119 GVQW1Q8N7I0 195 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 GOLGA5Q8TBA6 731 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 STARD4Q96DR4 205 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 ERO1AQ96HE7 468 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 FAM210AQ96ND0 272 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 NAA11Q9BSU3 229 aaPredicted RBP2.72□□□□□ -1.97
VPS13C-208ENST00000559119 UTP14AQ9BVJ6 771 aaKnown RBP2.72□□□□□ -1.97
VPS13C-208ENST00000559119 WWP1Q9H0M0 922 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 ZNF665Q9H7R5 613 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 TAS2R16Q9NYV7 291 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 SEC14L4Q9UDX3 406 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 CCPG1Q9ULG6 757 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 RAB26Q9ULW5 256 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 PLEKHG2Q9H7P9 1386 aa2.72□□□□□ -1.97
VPS13C-208ENST00000559119 SNAPC4Q5SXM2 1469 aa2.71□□□□□ -1.97
VPS13C-208ENST00000559119 ELP1O95163 1332 aa2.71□□□□□ -1.98
VPS13C-208ENST00000559119 SYNMO15061 1565 aa2.71□□□□□ -1.98
VPS13C-208ENST00000559119 TRABD2BA6NFA1 517 aa2.71□□□□□ -1.98
VPS13C-208ENST00000559119 ANXA2P2A6NMY6 339 aa2.71□□□□□ -1.98
VPS13C-208ENST00000559119 KIF2AO00139 706 aaPredicted RBP2.71□□□□□ -1.98
VPS13C-208ENST00000559119 DFNA5O60443 496 aa2.71□□□□□ -1.98
VPS13C-208ENST00000559119 NEMFO60524 1076 aa2.71□□□□□ -1.98
VPS13C-208ENST00000559119 CA11O75493 328 aa2.71□□□□□ -1.98
VPS13C-208ENST00000559119 ADCY5O95622 1261 aa2.71□□□□□ -1.98
VPS13C-208ENST00000559119 HSPB1P04792 205 aaKnown RBP2.71□□□□□ -1.98
VPS13C-208ENST00000559119 TPM1P09493 284 aa2.71□□□□□ -1.98
VPS13C-208ENST00000559119 VDRP11473 427 aa2.71□□□□□ -1.98
VPS13C-208ENST00000559119 H2AFXP16104 143 aaPredicted RBP2.71□□□□□ -1.98
VPS13C-208ENST00000559119 OR3A1P47881 315 aa2.71□□□□□ -1.98
VPS13C-208ENST00000559119 TDO2P48775 406 aa2.71□□□□□ -1.98
VPS13C-208ENST00000559119 MFAP2P55001 183 aa2.71□□□□□ -1.98
VPS13C-208ENST00000559119 EBI3Q14213 229 aa2.71□□□□□ -1.98
VPS13C-208ENST00000559119 ZNF273Q14593 569 aa2.71□□□□□ -1.98
VPS13C-208ENST00000559119 SCARA5Q6ZMJ2 495 aa2.71□□□□□ -1.98
VPS13C-208ENST00000559119 CHST3Q7LGC8 479 aa2.71□□□□□ -1.98
VPS13C-208ENST00000559119 NBPF5PQ86XG9 351 aaPredicted RBP2.71□□□□□ -1.98
VPS13C-208ENST00000559119 TGIF2LYQ8IUE0 185 aa2.71□□□□□ -1.98
VPS13C-208ENST00000559119 OTUD6BQ8N6M0 293 aa2.71□□□□□ -1.98
VPS13C-208ENST00000559119 CCDC112Q8NEF3 446 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms