RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 SHEQ5VZ18 495 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 C18orf63Q68DL7 685 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 GDPD4Q6W3E5 623 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 MACC1Q6ZN28 852 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 C9orf139Q6ZV77 190 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 PAQR9Q6ZVX9 377 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 ARHGAP22Q7Z5H3 698 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 SYVN1Q86TM6 617 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 C17orf82Q86X59 251 aaPredicted RBP5.29□□□□□ -1.56
RTF1-204ENST00000558117 BLIDQ8IZY5 108 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 C17orf53Q8N3J3 647 aaPredicted RBP5.29□□□□□ -1.56
RTF1-204ENST00000558117 ARL6IP6Q8N6S5 226 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 MCUQ8NE86 351 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 ROBO4Q8WZ75 1007 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 TAAR8Q969N4 342 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 CCDC47Q96A33 483 aaKnown RBP5.29□□□□□ -1.56
RTF1-204ENST00000558117 TMA16Q96EY4 203 aaKnown RBP5.29□□□□□ -1.56
RTF1-204ENST00000558117 CCDC34Q96HJ3 373 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 HES6Q96HZ4 224 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 C1orf74Q96LT6 269 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 SECISBP2Q96T21 854 aaKnown RBP5.29□□□□□ -1.56
RTF1-204ENST00000558117 PIGMQ9H3S5 423 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 CHMP4BQ9H444 224 aaKnown RBP5.29□□□□□ -1.56
RTF1-204ENST00000558117 ZBTB20Q9HC78 741 aaPredicted RBP5.29□□□□□ -1.56
RTF1-204ENST00000558117 OLAHQ9NV23 265 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 SH3BGRL2Q9UJC5 107 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 RASAL2Q9UJF2 1139 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 KLHL20Q9Y2M5 609 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 OR2W1Q9Y3N9 320 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 FAM169AQ9Y6X4 670 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 RYR2Q92736 4967 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 VWFP04275 2813 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 GTF3C1Q12789 2109 aa5.29□□□□□ -1.56
RTF1-204ENST00000558117 HERC2O95714 4834 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 LILRA5A6NI73 299 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 A8MXE2 369 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 BMPR1BO00238 502 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 RTCAO00442 366 aaKnown RBP5.28□□□□□ -1.56
RTF1-204ENST00000558117 HCRTR2O43614 444 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 SLCO2B1O94956 709 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 IGLV2-11P01706 119 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 PLEKP08567 350 aaPredicted RBP5.28□□□□□ -1.56
RTF1-204ENST00000558117 CTSEP14091 401 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 STMN1P16949 149 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 PTPN4P29074 926 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 USP8P40818 1118 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 FASLGP48023 281 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 ACOT2P49753 483 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 STK19P49842 368 aaPredicted RBP5.28□□□□□ -1.56
RTF1-204ENST00000558117 ZNF41P51814 821 aaPredicted RBP5.28□□□□□ -1.56
RTF1-204ENST00000558117 SLC12A3P55017 1021 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 SYT16Q17RD7 645 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 GKAP1Q5VSY0 366 aaPredicted RBP5.28□□□□□ -1.56
RTF1-204ENST00000558117 PAMR1Q6UXH9 720 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 GLDNQ6ZMI3 551 aaPredicted RBP5.28□□□□□ -1.56
RTF1-204ENST00000558117 CLEC17AQ6ZS10 378 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 SCD5Q86SK9 330 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 SDCCAG8Q86SQ7 713 aaPredicted RBP5.28□□□□□ -1.56
RTF1-204ENST00000558117 ACOT1Q86TX2 421 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.28□□□□□ -1.56
RTF1-204ENST00000558117 ZADH2Q8N4Q0 377 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 HJURPQ8NCD3 748 aaPredicted RBP5.28□□□□□ -1.56
RTF1-204ENST00000558117 FIBINQ8TAL6 211 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 OR8D1Q8WZ84 308 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 SGCDQ92629 289 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 PIGTQ969N2 578 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 TSACCQ96A04 125 aaPredicted RBP5.28□□□□□ -1.56
RTF1-204ENST00000558117 JAKMIP2Q96AA8 810 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 STAMBPL1Q96FJ0 436 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 RMND5BQ96G75 393 aaPredicted RBP5.28□□□□□ -1.56
RTF1-204ENST00000558117 EGLN2Q96KS0 407 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 NODALQ96S42 347 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 DDX50Q9BQ39 737 aaKnown RBP5.28□□□□□ -1.56
RTF1-204ENST00000558117 DPEP3Q9H4B8 488 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 FBXO44Q9H4M3 255 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 ZDHHC6Q9H6R6 413 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 AKIRIN1Q9H9L7 192 aaPredicted RBP5.28□□□□□ -1.56
RTF1-204ENST00000558117 LHX9Q9NQ69 397 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 KLHL1Q9NR64 748 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 STOML2Q9UJZ1 356 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 SCML2Q9UQR0 700 aa5.28□□□□□ -1.56
RTF1-204ENST00000558117 IGHV1OR21-1A0A087WYE8 117 aa5.27□□□□□ -1.57
RTF1-204ENST00000558117 A0A0B4J293 547 aa5.27□□□□□ -1.57
RTF1-204ENST00000558117 A0A1W2PQ09 198 aa5.27□□□□□ -1.57
RTF1-204ENST00000558117 PP2D1A8MPX8 630 aa5.27□□□□□ -1.57
RTF1-204ENST00000558117 RNF103O00237 685 aa5.27□□□□□ -1.57
RTF1-204ENST00000558117 MCF2LO15068 1137 aa5.27□□□□□ -1.57
RTF1-204ENST00000558117 XPNPEP2O43895 674 aa5.27□□□□□ -1.57
RTF1-204ENST00000558117 SHOX2O60902 331 aaPredicted RBP5.27□□□□□ -1.57
RTF1-204ENST00000558117 NDUFS3O75489 264 aa5.27□□□□□ -1.57
RTF1-204ENST00000558117 KIAA0754O94854 1291 aa5.27□□□□□ -1.57
RTF1-204ENST00000558117 PIGRP01833 764 aa5.27□□□□□ -1.57
RTF1-204ENST00000558117 MT-ND3P03897 115 aa5.27□□□□□ -1.57
RTF1-204ENST00000558117 CTSLP07711 333 aa5.27□□□□□ -1.57
RTF1-204ENST00000558117 GCH1P30793 250 aa5.27□□□□□ -1.57
RTF1-204ENST00000558117 HNF4AP41235 474 aa5.27□□□□□ -1.57
RTF1-204ENST00000558117 PRCPP42785 496 aa5.27□□□□□ -1.57
RTF1-204ENST00000558117 ZNF131P52739 623 aa5.27□□□□□ -1.57
RTF1-204ENST00000558117 MAZP56270 477 aaKnown RBP5.27□□□□□ -1.57
RTF1-204ENST00000558117 RPS21P63220 83 aaKnown RBP5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms