RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 TICAM1Q8IUC6 712 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 ARMC10Q8N2F6 343 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 FNDC5Q8NAU1 212 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 OR5L2Q8NGL0 311 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 OR8K3Q8NH51 312 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 DYDC1Q8WWB3 177 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 ZNF75CPQ92670 426 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-228ENST00000557302 EGLN2Q96KS0 407 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 PPP1R36Q96LQ0 422 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 ZNF681Q96N22 645 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 TSSK3Q96PN8 268 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 BBS4Q96RK4 519 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 UTP23Q9BRU9 249 aaKnown RBP12.63□□□□□ -0.39
SHMT2-228ENST00000557302 SLC35C2Q9NQQ7 365 aa12.63□□□□□ -0.39
SHMT2-228ENST00000557302 TRAV17A0A0B4J275 112 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 TTLL8A6PVC2 850 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 CDK2AP1O14519 115 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 ITGA10O75578 1167 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 SORBS2O94875 1100 aaKnown RBP12.62□□□□□ -0.39
SHMT2-228ENST00000557302 BCKDHAP12694 445 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 RNF4P78317 190 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 OCRLQ01968 901 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 OC90Q02509 493 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-228ENST00000557302 DUSP2Q05923 314 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 FUT7Q11130 342 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 MAD2L1Q13257 205 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-228ENST00000557302 TUBA3CQ13748 450 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 TUBA3EQ6PEY2 450 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 SLC29A4Q7RTT9 530 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 ZNF605Q86T29 641 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 C9orf40Q8IXQ3 194 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 VWA5B2Q8N398 1253 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 Q8NA96 180 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 CATSPER1Q8NEC5 780 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 CLHC1Q8NHS4 586 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 SUN3Q8TAQ9 357 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 LRRC8CQ8TDW0 803 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 GFM2Q969S9 779 aaKnown RBP12.62□□□□□ -0.39
SHMT2-228ENST00000557302 C1orf50Q9BV19 199 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 NUF2Q9BZD4 464 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 BRINP2Q9C0B6 783 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 EPN3Q9H201 632 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 INTS9Q9NV88 658 aaKnown RBP12.62□□□□□ -0.39
SHMT2-228ENST00000557302 TAS2R7Q9NYW3 318 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 MYOTQ9UBF9 498 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 BAIAP2L1Q9UHR4 511 aa12.62□□□□□ -0.39
SHMT2-228ENST00000557302 EIF3LQ9Y262 564 aaKnown RBP12.62□□□□□ -0.39
SHMT2-228ENST00000557302 YARS2Q9Y2Z4 477 aaKnown RBP12.62□□□□□ -0.39
SHMT2-228ENST00000557302 SETXQ7Z333 2677 aaKnown RBP12.62□□□□□ -0.39
SHMT2-228ENST00000557302 TMEM200CA6NKL6 621 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 OR6C76A6NM76 312 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 SLCO1B7G3V0H7 640 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 HDAC3O15379 428 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 AKAP10O43572 662 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 VPS4BO75351 444 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 OR2J2O76002 312 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 LRATO95237 230 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 CT62P0C5K7 136 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 PRPS2P11908 318 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 NTSP30990 170 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 SSTR4P31391 388 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 MPIP34949 423 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 TRHRP34981 398 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-228ENST00000557302 CD96P40200 585 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 CYB561P49447 251 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 ST13P50502 369 aaKnown RBP12.61□□□□□ -0.39
SHMT2-228ENST00000557302 SSR4P51571 173 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 SLC37A1P57057 533 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 MAP4K2Q12851 820 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 CEBPEQ15744 281 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 SMU1Q2TAY7 513 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 PRICKLE4Q2TBC4 344 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 IL23RQ5VWK5 629 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 CCDC116Q8IYX3 515 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 FAM9CQ8IZT9 166 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 LIX1Q8N485 282 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 TMEM156Q8N614 296 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 HORMAD2Q8N7B1 307 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 ADCY4Q8NFM4 1077 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 OR7G1Q8NGA0 311 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 NUBPLQ8TB37 319 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 PPCDCQ96CD2 204 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 ZNF764Q96H86 408 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-228ENST00000557302 GAL3ST4Q96RP7 486 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 REEP4Q9H6H4 257 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 AKTIPQ9H8T0 292 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 LIN28AQ9H9Z2 209 aaKnown RBP12.61□□□□□ -0.39
SHMT2-228ENST00000557302 MEAF6Q9HAF1 191 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 ANKRD10Q9NXR5 420 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 MAT2BQ9NZL9 334 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 MARCOQ9UEW3 520 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-228ENST00000557302 EXO1Q9UQ84 846 aaKnown RBP12.61□□□□□ -0.39
SHMT2-228ENST00000557302 PCDHGA10Q9Y5H3 936 aa12.61□□□□□ -0.39
SHMT2-228ENST00000557302 PRRC2CQ9Y520 2896 aaKnown RBP12.61□□□□□ -0.39
SHMT2-228ENST00000557302 CPAMD8Q8IZJ3 1885 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 TRPC5OSA6NMA1 111 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 MYO1GB0I1T2 1018 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 WWP2O00308 870 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 PRAMEF2O60811 474 aa12.6□□□□□ -0.39
SHMT2-228ENST00000557302 CLPSP04118 112 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms