RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 SLC39A1Q9NY26 324 aa13.6□□□□□ -0.23
SHMT2-208ENST00000553868 LUZP4Q9P127 313 aa13.6□□□□□ -0.23
SHMT2-208ENST00000553868 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-208ENST00000553868 DAPP1Q9UN19 280 aa13.6□□□□□ -0.23
SHMT2-208ENST00000553868 CDC14AQ9UNH5 594 aa13.6□□□□□ -0.23
SHMT2-208ENST00000553868 EXO1Q9UQ84 846 aaKnown RBP13.6□□□□□ -0.23
SHMT2-208ENST00000553868 NAALAD2Q9Y3Q0 740 aa13.6□□□□□ -0.23
SHMT2-208ENST00000553868 L3MBTL1Q9Y468 752 aa13.6□□□□□ -0.23
SHMT2-208ENST00000553868 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.6□□□□□ -0.23
SHMT2-208ENST00000553868 SNRNP200O75643 2136 aaKnown RBP13.6□□□□□ -0.23
SHMT2-208ENST00000553868 A0A1W2PR48 441 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 PDPK1O15530 556 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 HNRNPRO43390 633 aaKnown RBP13.59□□□□□ -0.23
SHMT2-208ENST00000553868 PROM1O43490 865 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 HCRTR1O43613 425 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 DNAJA2O60884 412 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 DNAJB5O75953 348 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 NSA2O95478 260 aaKnown RBP13.59□□□□□ -0.23
SHMT2-208ENST00000553868 AIFM1O95831 613 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 FOLR1P15328 257 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 PPIBP23284 216 aaKnown RBP13.59□□□□□ -0.23
SHMT2-208ENST00000553868 NTSP30990 170 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 WNT3P56703 355 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 PHC1P78364 1004 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 KCNAB1Q14722 419 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 GPR19Q15760 415 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 LRIF1Q5T3J3 769 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 OR52E8Q6IFG1 317 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 ANKRD26P1Q6NSI1 321 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 DLEU7Q6UYE1 221 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 MCEMP1Q8IX19 187 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 ULK2Q8IYT8 1036 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 ARHGEF39Q8N4T4 335 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 TRIML2Q8N7C3 387 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 OR8J3Q8NGG0 315 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 ZBED6CLQ96FA7 236 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-208ENST00000553868 CDRT15Q96T59 188 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 CGREF1Q99674 301 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 MAPKAP1Q9BPZ7 522 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 GPATCH1Q9BRR8 931 aaKnown RBP13.59□□□□□ -0.23
SHMT2-208ENST00000553868 NDC1Q9BTX1 674 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 ACSS1Q9NUB1 689 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-208ENST00000553868 ENTPD4Q9Y227 616 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 MRPS2Q9Y399 296 aaKnown RBP13.59□□□□□ -0.23
SHMT2-208ENST00000553868 ATG4BQ9Y4P1 393 aa13.59□□□□□ -0.23
SHMT2-208ENST00000553868 A0A1W2PRB8 838 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 H0YIG0 161 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 FXYD1O00168 92 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 B3GALT4O96024 378 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 ZCCHC18P0CG32 403 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 F8A1P23610 371 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 CSTF2P33240 577 aaKnown RBP eCLIP13.58□□□□□ -0.24
SHMT2-208ENST00000553868 SLC7A2P52569 658 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 LIM2P55344 173 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 RUNX2Q13950 521 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 CAPRIN1Q14444 709 aaKnown RBP13.58□□□□□ -0.24
SHMT2-208ENST00000553868 INPP5JQ15735 1006 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-208ENST00000553868 ZNF385BQ569K4 471 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 SLC48A1Q6P1K1 146 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 ANKRD46Q86W74 232 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 NLGN4XQ8N0W4 816 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 SLC34A3Q8N130 599 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 FBXW8Q8N3Y1 598 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 NLGN4YQ8NFZ3 816 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-208ENST00000553868 OR4A15Q8NGL6 344 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 NUDT8Q8WV74 236 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 OR5P2Q8WZ92 322 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 EXOSC8Q96B26 276 aaKnown RBP13.58□□□□□ -0.24
SHMT2-208ENST00000553868 C10orf90Q96M02 699 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 BBS4Q96RK4 519 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 CTRCQ99895 268 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 DDA1Q9BW61 102 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 SPRTNQ9H040 489 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-208ENST00000553868 PAIP1Q9H074 479 aaKnown RBP13.58□□□□□ -0.24
SHMT2-208ENST00000553868 NEUROD4Q9HD90 331 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 SERHLQ9NQF3 203 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 SLC35C2Q9NQQ7 365 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 CUTCQ9NTM9 273 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 KCMF1Q9P0J7 381 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 TMEM181Q9P2C4 612 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 ZNF282Q9UDV7 671 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-208ENST00000553868 BCAP29Q9UHQ4 241 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 UTS2RQ9UKP6 389 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 MRPS33Q9Y291 106 aaKnown RBP13.58□□□□□ -0.24
SHMT2-208ENST00000553868 ZNF780BQ9Y6R6 833 aa13.58□□□□□ -0.24
SHMT2-208ENST00000553868 A0A0A6YYC8 382 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-208ENST00000553868 EVPLLA8MZ36 301 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 I3L1I5 382 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-208ENST00000553868 SGK494L7N484 410 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 SCN2BO60939 215 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 SORBS2O94875 1100 aaKnown RBP13.57□□□□□ -0.24
SHMT2-208ENST00000553868 STAMBPO95630 424 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 CPSF4O95639 269 aaKnown RBP13.57□□□□□ -0.24
SHMT2-208ENST00000553868 RNH1P13489 461 aaKnown RBP13.57□□□□□ -0.24
SHMT2-208ENST00000553868 ME2P23368 584 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 SLC6A2P23975 617 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 PPP2R1BP30154 601 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 RAB38P57729 211 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 EEFSECP57772 596 aaKnown RBP13.57□□□□□ -0.24
SHMT2-208ENST00000553868 PLIN5Q00G26 463 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms