RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 LIMK1P53667 647 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 GFERP55789 205 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 ITGA1P56199 1179 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 NME5P56597 212 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 TAS2R50P59544 299 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 RAE1P78406 368 aaKnown RBP4.73□□□□□ -1.65
VTI1B-202ENST00000553619 KLC1Q07866 573 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 ACTN3Q08043 901 aaPredicted RBP4.73□□□□□ -1.65
VTI1B-202ENST00000553619 SLAMF1Q13291 335 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 IL11RAQ14626 422 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 SF3A2Q15428 464 aaKnown RBP4.73□□□□□ -1.65
VTI1B-202ENST00000553619 HKDC1Q2TB90 917 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 PRTGQ2VWP7 1150 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 PGS1Q32NB8 556 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 VPS26BQ4G0F5 336 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 PHF19Q5T6S3 580 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 MRM1Q6IN84 353 aaKnown RBP4.73□□□□□ -1.65
VTI1B-202ENST00000553619 FRMPD2BQ6IN97 320 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 FAM71E1Q6IPT2 247 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 TCEAL6Q6IPX3 200 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 RBM44Q6ZP01 1051 aaKnown RBP4.73□□□□□ -1.65
VTI1B-202ENST00000553619 VN1R4Q7Z5H5 301 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 ARPINQ7Z6K5 226 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 SNX32Q86XE0 403 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 FUNDC1Q8IVP5 155 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 DSELQ8IZU8 1212 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 OR4N4Q8N0Y3 316 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 RNF175Q8N4F7 328 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 TRIML2Q8N7C3 387 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 ACOT4Q8N9L9 421 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 OR8J2Q8NGG1 315 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 OR2I1PQ8NGU4 316 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 ZFP28Q8NHY6 868 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 CDC26Q8NHZ8 85 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 TANKQ92844 425 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 TCEAL3Q969E4 200 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 MCUR1Q96AQ8 359 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 PPCDCQ96CD2 204 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 COQ8BQ96D53 544 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 ZNF764Q96H86 408 aaPredicted RBP4.73□□□□□ -1.65
VTI1B-202ENST00000553619 MARK4Q96L34 752 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 CCDC140Q96MF4 163 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 ZNF285Q96NJ3 590 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 TSSK3Q96PN8 268 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 GBP5Q96PP8 586 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 OR52E6Q96RD3 313 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 MYCBPQ99417 103 aaPredicted RBP4.73□□□□□ -1.65
VTI1B-202ENST00000553619 CMKLR1Q99788 373 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 C17orf62Q9BQA9 187 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 ZPBPQ9BS86 351 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 DUSP26Q9BV47 211 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 SMOC1Q9H4F8 434 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 RAD21L1Q9H4I0 556 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 KLHL31Q9H511 634 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 CLMPQ9H6B4 373 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 SYNDIG1Q9H7V2 258 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 CAAP1Q9H8G2 361 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 FAM60AQ9NP50 221 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 FGF21Q9NSA1 209 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 FAM120CQ9NX05 1096 aaKnown RBP4.73□□□□□ -1.65
VTI1B-202ENST00000553619 TAS2R7Q9NYW3 318 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 TAS2R1Q9NYW7 299 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 EHD3Q9NZN3 535 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 GIMAP2Q9UG22 337 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 FBXW2Q9UKT8 454 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 RARRES3Q9UL19 164 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 SRPK3Q9UPE1 567 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 DLGAP4Q9Y2H0 992 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 L3MBTL1Q9Y468 752 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 ZNF780BQ9Y6R6 833 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 U3KQA8 63 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 COL5A1P20908 1838 aaPredicted RBP4.73□□□□□ -1.65
VTI1B-202ENST00000553619 SPTBN5Q9NRC6 3674 aaKnown RBP4.73□□□□□ -1.65
VTI1B-202ENST00000553619 A0A0C4DFX4 3053 aa4.73□□□□□ -1.65
VTI1B-202ENST00000553619 ZNF318Q5VUA4 2279 aa4.72□□□□□ -1.65
VTI1B-202ENST00000553619 A0A0A6YYD5 115 aa4.72□□□□□ -1.65
VTI1B-202ENST00000553619 A0A1W2PRB8 838 aa4.72□□□□□ -1.65
VTI1B-202ENST00000553619 H0YHG0 523 aa4.72□□□□□ -1.65
VTI1B-202ENST00000553619 RTCAO00442 366 aaKnown RBP4.72□□□□□ -1.65
VTI1B-202ENST00000553619 NR5A2O00482 541 aa4.72□□□□□ -1.65
VTI1B-202ENST00000553619 RNASET2O00584 256 aaKnown RBP4.72□□□□□ -1.65
VTI1B-202ENST00000553619 DSCR3O14972 297 aa4.72□□□□□ -1.65
VTI1B-202ENST00000553619 ANKRD28O15084 1053 aa4.72□□□□□ -1.65
VTI1B-202ENST00000553619 SCAMP2O15127 329 aaKnown RBP4.72□□□□□ -1.65
VTI1B-202ENST00000553619 NVLO15381 856 aaKnown RBP4.72□□□□□ -1.65
VTI1B-202ENST00000553619 PROM1O43490 865 aa4.72□□□□□ -1.65
VTI1B-202ENST00000553619 AKAP10O43572 662 aa4.72□□□□□ -1.65
VTI1B-202ENST00000553619 SUSD5O60279 629 aa4.72□□□□□ -1.65
VTI1B-202ENST00000553619 GALR3O60755 368 aaPredicted RBP4.72□□□□□ -1.65
VTI1B-202ENST00000553619 GMNNO75496 209 aa4.72□□□□□ -1.65
VTI1B-202ENST00000553619 RFPL3O75679 317 aa4.72□□□□□ -1.65
VTI1B-202ENST00000553619 CIB2O75838 187 aa4.72□□□□□ -1.65
VTI1B-202ENST00000553619 LRATO95237 230 aa4.72□□□□□ -1.65
VTI1B-202ENST00000553619 CBX6O95503 412 aa4.72□□□□□ -1.65
VTI1B-202ENST00000553619 KRT75O95678 551 aa4.72□□□□□ -1.65
VTI1B-202ENST00000553619 TBX6O95947 436 aaPredicted RBP4.72□□□□□ -1.65
VTI1B-202ENST00000553619 KLK3P07288 261 aaPredicted RBP4.72□□□□□ -1.65
VTI1B-202ENST00000553619 IL3P08700 152 aa4.72□□□□□ -1.65
VTI1B-202ENST00000553619 ZCCHC18P0CG32 403 aa4.72□□□□□ -1.65
VTI1B-202ENST00000553619 MYF5P13349 255 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 820.6 ms