RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 PMPCAQ10713 525 aa10.03□□□□□ -0.8
VTI1BP3-201ENST00000550220 FUT7Q11130 342 aa10.03□□□□□ -0.8
VTI1BP3-201ENST00000550220 EBPQ15125 230 aaKnown RBP10.03□□□□□ -0.8
VTI1BP3-201ENST00000550220 NTRK2Q16620 822 aa10.03□□□□□ -0.8
VTI1BP3-201ENST00000550220 TMEM198Q66K66 360 aa10.03□□□□□ -0.8
VTI1BP3-201ENST00000550220 B3GNT6Q6ZMB0 384 aa10.03□□□□□ -0.8
VTI1BP3-201ENST00000550220 TIFABQ6ZNK6 161 aa10.03□□□□□ -0.8
VTI1BP3-201ENST00000550220 TRMT10CQ7L0Y3 403 aaKnown RBP10.03□□□□□ -0.8
VTI1BP3-201ENST00000550220 IFT20Q8IY31 132 aa10.03□□□□□ -0.8
VTI1BP3-201ENST00000550220 METTL4Q8N3J2 472 aa10.03□□□□□ -0.8
VTI1BP3-201ENST00000550220 RNF175Q8N4F7 328 aa10.03□□□□□ -0.8
VTI1BP3-201ENST00000550220 ACBD4Q8NC06 268 aa10.03□□□□□ -0.8
VTI1BP3-201ENST00000550220 FAM13CQ8NE31 585 aa10.03□□□□□ -0.8
VTI1BP3-201ENST00000550220 OR52B6Q8NGF0 335 aa10.03□□□□□ -0.8
VTI1BP3-201ENST00000550220 LURAP1Q96LR2 239 aa10.03□□□□□ -0.8
VTI1BP3-201ENST00000550220 CDK15Q96Q40 435 aa10.03□□□□□ -0.8
VTI1BP3-201ENST00000550220 TREX2Q9BQ50 279 aaPredicted RBP10.03□□□□□ -0.8
VTI1BP3-201ENST00000550220 FAIM2Q9BWQ8 316 aa10.03□□□□□ -0.8
VTI1BP3-201ENST00000550220 TUBA8Q9NY65 449 aaPredicted RBP10.03□□□□□ -0.8
VTI1BP3-201ENST00000550220 DMGDHQ9UI17 866 aaKnown RBP10.03□□□□□ -0.8
VTI1BP3-201ENST00000550220 NFU1Q9UMS0 254 aa10.03□□□□□ -0.8
VTI1BP3-201ENST00000550220 STK38LQ9Y2H1 464 aa10.03□□□□□ -0.8
VTI1BP3-201ENST00000550220 CRYBG3Q68DQ2 2970 aa10.03□□□□□ -0.8
VTI1BP3-201ENST00000550220 EXOC1LA0A1B0GW35 172 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 CCDC151A5D8V7 595 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 TRIM49D1C9J1S8 452 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 G3V3Y1 287 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 C19orf84I3L1E1 186 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 PGRMC2O15173 223 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 ZNHIT1O43257 154 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 ZNF354AO60765 605 aaPredicted RBP10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 NADKO95544 446 aaPredicted RBP10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 KRT6AP02538 564 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 KRT6BP04259 564 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 RPS17P08708 135 aaKnown RBP10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 CPMP14384 443 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 PORP16435 677 aaPredicted RBP10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 NAGAP17050 411 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 CSNK2A2P19784 350 aaPredicted RBP10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 PIGAP37287 484 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 PEX19P40855 299 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 MAGEA5P43359 124 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 KIR3DL1P43629 444 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 KRT6CP48668 564 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 TRA2BP62995 288 aaKnown RBP10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 TRAF3Q13114 568 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 CDSNQ15517 529 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 EMC4Q5J8M3 183 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 ZNF585AQ6P3V2 769 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 LYPD8Q6UX82 237 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 MEX3BQ6ZN04 569 aaKnown RBP10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 DGAT2L6Q6ZPD8 337 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 PACS2Q86VP3 889 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 SLC22A9Q8IVM8 553 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 SAMD14Q8IZD0 417 aaPredicted RBP10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 ZNF295-AS1Q8N0V1 137 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 CLYBLQ8N0X4 340 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 LRRC25Q8N386 305 aaPredicted RBP10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 LIX1Q8N485 282 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 MARVELD2Q8N4S9 558 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 CEP112Q8N8E3 955 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 OR4F6Q8NGB9 312 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 OR10Q1Q8NGQ4 319 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 KIF18AQ8NI77 898 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 DCAKDQ8WVC6 231 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 SELENOMQ8WWX9 145 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 DTNBP1Q96EV8 351 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 TTYH2Q9BSA4 534 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 DOHHQ9BU89 302 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 OR10A5Q9H207 317 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 SEMA4BQ9NPR2 832 aaPredicted RBP10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 ZNF358Q9NW07 568 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 TRPS1Q9UHF7 1281 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 RNF6Q9Y252 685 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 PCDHA9Q9Y5H5 950 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 HRH3Q9Y5N1 445 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 NPFFR2Q9Y5X5 522 aa10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 CHCHD2Q9Y6H1 151 aaPredicted RBP10.02□□□□□ -0.81
VTI1BP3-201ENST00000550220 A0A0G2JMM0 328 aa10.01□□□□□ -0.81
VTI1BP3-201ENST00000550220 A0A1W2PPB8 328 aa10.01□□□□□ -0.81
VTI1BP3-201ENST00000550220 A0A1W2PRS3 328 aa10.01□□□□□ -0.81
VTI1BP3-201ENST00000550220 KIR3DP1A8MWS1 328 aa10.01□□□□□ -0.81
VTI1BP3-201ENST00000550220 AHRRA9YTQ3 701 aa10.01□□□□□ -0.81
VTI1BP3-201ENST00000550220 HRKO00198 91 aa10.01□□□□□ -0.81
VTI1BP3-201ENST00000550220 PRKRAO75569 313 aaKnown RBP10.01□□□□□ -0.81
VTI1BP3-201ENST00000550220 BCAS2O75934 225 aaPredicted RBP10.01□□□□□ -0.81
VTI1BP3-201ENST00000550220 ATP1B1P05026 303 aa10.01□□□□□ -0.81
VTI1BP3-201ENST00000550220 KRT15P19012 456 aa10.01□□□□□ -0.81
VTI1BP3-201ENST00000550220 NT5EP21589 574 aa10.01□□□□□ -0.81
VTI1BP3-201ENST00000550220 ZFP36L2P47974 494 aaKnown RBP10.01□□□□□ -0.81
VTI1BP3-201ENST00000550220 NR0B1P51843 470 aaKnown RBP10.01□□□□□ -0.81
VTI1BP3-201ENST00000550220 NAA20P61599 178 aa10.01□□□□□ -0.81
VTI1BP3-201ENST00000550220 DCAF7P61962 342 aa10.01□□□□□ -0.81
VTI1BP3-201ENST00000550220 PSPHP78330 225 aa10.01□□□□□ -0.81
VTI1BP3-201ENST00000550220 MAP4K2Q12851 820 aa10.01□□□□□ -0.81
VTI1BP3-201ENST00000550220 RASA2Q15283 850 aa10.01□□□□□ -0.81
VTI1BP3-201ENST00000550220 RPS6KA2Q15349 733 aa10.01□□□□□ -0.81
VTI1BP3-201ENST00000550220 SLC25A35Q3KQZ1 300 aa10.01□□□□□ -0.81
VTI1BP3-201ENST00000550220 SGO1Q5FBB7 561 aa10.01□□□□□ -0.81
VTI1BP3-201ENST00000550220 SLC48A1Q6P1K1 146 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms