RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 CNPPD1Q9BV87 410 aa17.48■□□□□ 0.39
VPS33A-205ENST00000541169 SLCO1B3Q9NPD5 702 aa17.48■□□□□ 0.39
VPS33A-205ENST00000541169 PTGFRNQ9P2B2 879 aa17.48■□□□□ 0.39
VPS33A-205ENST00000541169 BAIAP2L1Q9UHR4 511 aa17.48■□□□□ 0.39
VPS33A-205ENST00000541169 TP53TG5Q9Y2B4 290 aa17.48■□□□□ 0.39
VPS33A-205ENST00000541169 DOCK10Q96BY6 2186 aa17.47■□□□□ 0.39
VPS33A-205ENST00000541169 CACNA1GO43497 2377 aa17.47■□□□□ 0.39
VPS33A-205ENST00000541169 CROCCQ5TZA2 2017 aa17.47■□□□□ 0.39
VPS33A-205ENST00000541169 EIF4E1BA6NMX2 242 aaKnown RBP17.47■□□□□ 0.39
VPS33A-205ENST00000541169 WASHC1A8K0Z3 465 aa17.47■□□□□ 0.39
VPS33A-205ENST00000541169 A8MUI8 341 aa17.47■□□□□ 0.39
VPS33A-205ENST00000541169 SCAMP2O15127 329 aaKnown RBP17.47■□□□□ 0.39
VPS33A-205ENST00000541169 PDPK1O15530 556 aa17.47■□□□□ 0.39
VPS33A-205ENST00000541169 EDF1O60869 148 aaKnown RBP17.47■□□□□ 0.39
VPS33A-205ENST00000541169 G6PDP11413 515 aa17.47■□□□□ 0.39
VPS33A-205ENST00000541169 EPHA3P29320 983 aa17.47■□□□□ 0.39
VPS33A-205ENST00000541169 MDH1P40925 334 aaKnown RBP17.47■□□□□ 0.39
VPS33A-205ENST00000541169 CASRP41180 1078 aa17.47■□□□□ 0.39
VPS33A-205ENST00000541169 GSTA3Q16772 222 aa17.47■□□□□ 0.39
VPS33A-205ENST00000541169 PRICKLE4Q2TBC4 344 aa17.47■□□□□ 0.39
VPS33A-205ENST00000541169 CPTPQ5TA50 214 aa17.47■□□□□ 0.39
VPS33A-205ENST00000541169 SLC15A4Q8N697 577 aa17.47■□□□□ 0.39
VPS33A-205ENST00000541169 SIRT6Q8N6T7 355 aa17.47■□□□□ 0.39
VPS33A-205ENST00000541169 C17orf47Q8NEP4 570 aa17.47■□□□□ 0.39
VPS33A-205ENST00000541169 UCN3Q969E3 161 aa17.47■□□□□ 0.39
VPS33A-205ENST00000541169 CTHRC1Q96CG8 243 aa17.47■□□□□ 0.39
VPS33A-205ENST00000541169 CCDC28BQ9BUN5 200 aa17.47■□□□□ 0.39
VPS33A-205ENST00000541169 MRGBPQ9NV56 204 aa17.47■□□□□ 0.39
VPS33A-205ENST00000541169 SH3BP4Q9P0V3 963 aa17.47■□□□□ 0.39
VPS33A-205ENST00000541169 EXO1Q9UQ84 846 aaKnown RBP17.47■□□□□ 0.39
VPS33A-205ENST00000541169 YARS2Q9Y2Z4 477 aaKnown RBP17.47■□□□□ 0.39
VPS33A-205ENST00000541169 A0A087WV62 115 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 GABRR3A8MPY1 467 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 TCP11X1B4DZS4 312 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 ZNF195O14628 629 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 POLR3GO15318 223 aaPredicted RBP17.46■□□□□ 0.39
VPS33A-205ENST00000541169 PLOD3O60568 738 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 PRAMEF2O60811 474 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 DIAPH2O60879 1101 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 RNF4P78317 190 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 SRSF11Q05519 484 aaKnown RBP17.46■□□□□ 0.39
VPS33A-205ENST00000541169 LRRC74AQ0VAA2 488 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 KLRB1Q12918 225 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 RAPSNQ13702 412 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 LY6DQ14210 128 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 PTGR1Q14914 329 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 MLC1Q15049 377 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 RPS6KA2Q15349 733 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 MPEG1Q2M385 716 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 NXNQ6DKJ4 435 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 FAM47EQ6ZV65 393 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 RIMKLAQ8IXN7 391 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 GPALPP1Q8IXQ4 340 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 CCDC116Q8IYX3 515 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 DND1Q8IYX4 353 aaKnown RBP17.46■□□□□ 0.39
VPS33A-205ENST00000541169 MMP21Q8N119 569 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 GLB1L3Q8NCI6 653 aaPredicted RBP17.46■□□□□ 0.39
VPS33A-205ENST00000541169 VPS37AQ8NEZ2 397 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 TP53INP1Q96A56 240 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 TESCQ96BS2 214 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 COQ8BQ96D53 544 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 DPY30Q9C005 99 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 BRINP2Q9C0B6 783 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 BHLHE41Q9C0J9 482 aaPredicted RBP17.46■□□□□ 0.39
VPS33A-205ENST00000541169 MYOTQ9UBF9 498 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 PRODH2Q9UF12 536 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 GIMAP2Q9UG22 337 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 ZNF639Q9UID6 485 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 ERVK-19Q9WJR5 959 aa17.46■□□□□ 0.39
VPS33A-205ENST00000541169 MASP2O00187 686 aa17.45■□□□□ 0.38
VPS33A-205ENST00000541169 PLOD2O00469 737 aa17.45■□□□□ 0.38
VPS33A-205ENST00000541169 AKAP10O43572 662 aa17.45■□□□□ 0.38
VPS33A-205ENST00000541169 CELA2AP08217 269 aa17.45■□□□□ 0.38
VPS33A-205ENST00000541169 TROVE2P10155 538 aaKnown RBP eCLIP17.45■□□□□ 0.38
VPS33A-205ENST00000541169 FRKP42685 505 aaPredicted RBP17.45■□□□□ 0.38
VPS33A-205ENST00000541169 NCBP2P52298 156 aaKnown RBP eCLIP17.45■□□□□ 0.38
VPS33A-205ENST00000541169 SLC37A1P57057 533 aa17.45■□□□□ 0.38
VPS33A-205ENST00000541169 MLF1P58340 268 aa17.45■□□□□ 0.38
VPS33A-205ENST00000541169 DCAF7P61962 342 aa17.45■□□□□ 0.38
VPS33A-205ENST00000541169 TLR1Q15399 786 aa17.45■□□□□ 0.38
VPS33A-205ENST00000541169 LSM12Q3MHD2 195 aaKnown RBP17.45■□□□□ 0.38
VPS33A-205ENST00000541169 TEX19Q8NA77 164 aa17.45■□□□□ 0.38
VPS33A-205ENST00000541169 SUN3Q8TAQ9 357 aa17.45■□□□□ 0.38
VPS33A-205ENST00000541169 AMDHD1Q96NU7 426 aa17.45■□□□□ 0.38
VPS33A-205ENST00000541169 ZBTB18Q99592 522 aa17.45■□□□□ 0.38
VPS33A-205ENST00000541169 WDR55Q9H6Y2 383 aaPredicted RBP17.45■□□□□ 0.38
VPS33A-205ENST00000541169 TCF7L2Q9NQB0 619 aa17.45■□□□□ 0.38
VPS33A-205ENST00000541169 AIG1Q9NVV5 245 aa17.45■□□□□ 0.38
VPS33A-205ENST00000541169 TMEM45AQ9NWC5 275 aa17.45■□□□□ 0.38
VPS33A-205ENST00000541169 MAT2BQ9NZL9 334 aa17.45■□□□□ 0.38
VPS33A-205ENST00000541169 ANAPC2Q9UJX6 822 aa17.45■□□□□ 0.38
VPS33A-205ENST00000541169 CPAMD8Q8IZJ3 1885 aa17.44■□□□□ 0.38
VPS33A-205ENST00000541169 GOLGA8QA0A0J9YX86 632 aa17.44■□□□□ 0.38
VPS33A-205ENST00000541169 MYOCOSA0A1B0GUC4 107 aa17.44■□□□□ 0.38
VPS33A-205ENST00000541169 GOLGA8OA6NCC3 632 aa17.44■□□□□ 0.38
VPS33A-205ENST00000541169 TTC36A6NLP5 189 aa17.44■□□□□ 0.38
VPS33A-205ENST00000541169 GOLGA8NF8WBI6 632 aa17.44■□□□□ 0.38
VPS33A-205ENST00000541169 UBDO15205 165 aa17.44■□□□□ 0.38
VPS33A-205ENST00000541169 COQ9O75208 318 aa17.44■□□□□ 0.38
VPS33A-205ENST00000541169 LRATO95237 230 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms