RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 C14orf119Q9NWQ9 140 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 AHSPQ9NZD4 102 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 THAP10Q9P2Z0 257 aaPredicted RBP15.99■□□□□ 0.15
USP28-208ENST00000540438 YARS2Q9Y2Z4 477 aaKnown RBP15.99■□□□□ 0.15
USP28-208ENST00000540438 RBMX2Q9Y388 322 aaKnown RBP15.99■□□□□ 0.15
USP28-208ENST00000540438 CACNA1CQ13936 2221 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 NPIPA5A0A0B4J1W7 369 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 NPIPA7E9PJI5 369 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 FCMRO60667 390 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 MFN2O95140 757 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 NPIPA8P0DM63 369 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 DGUOKQ16854 277 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 SLC22A16Q86VW1 577 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 NUDT13Q86X67 352 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 VRK2Q86Y07 508 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 CROCCP3Q8IVE0 287 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 RGMAQ96B86 450 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 ZNF514Q96K75 400 aaPredicted RBP15.99■□□□□ 0.15
USP28-208ENST00000540438 BTBD2Q9BX70 525 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 SPATA7Q9P0W8 599 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 NFKBIL1Q9UBC1 381 aaPredicted RBP15.99■□□□□ 0.15
USP28-208ENST00000540438 TBC1D29Q9UFV1 150 aa15.99■□□□□ 0.15
USP28-208ENST00000540438 OR2W5A6NFC9 320 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 CTDSP2O14595 271 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 CEACAM5P06731 702 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 FUT1P19526 365 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 CRISP1P54107 249 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 PCBP3P57721 371 aaKnown RBP15.98■□□□□ 0.15
USP28-208ENST00000540438 SIM1P81133 766 aaPredicted RBP15.98■□□□□ 0.15
USP28-208ENST00000540438 TMEM52BQ4KMG9 183 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 TOR1AIP1Q5JTV8 583 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 ZC3H14Q6PJT7 736 aaKnown RBP15.98■□□□□ 0.15
USP28-208ENST00000540438 C7orf57Q8NEG2 295 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 SLIRPQ9GZT3 109 aaKnown RBP15.98■□□□□ 0.15
USP28-208ENST00000540438 POLR2J3Q9H1A7 115 aaKnown RBP15.98■□□□□ 0.15
USP28-208ENST00000540438 TMCC3Q9ULS5 477 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 POFUT2Q9Y2G5 429 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 CABIN1Q9Y6J0 2220 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 C17orf113A0A1B0GUU1 675 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 LRIT2A6NDA9 550 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 RGS5O15539 181 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 SSX4O60224 188 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 CDK1P06493 297 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 CHRM4P08173 479 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 COL9A1P20849 921 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 DCST1Q5T197 706 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 C10orf62Q5T681 223 aaPredicted RBP15.98■□□□□ 0.15
USP28-208ENST00000540438 UBE2J2Q8N2K1 259 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 PGBD3Q8N328 593 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 SVOPQ8N4V2 548 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 ACOT4Q8N9L9 421 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 TRUB1Q8WWH5 349 aaKnown RBP15.98■□□□□ 0.15
USP28-208ENST00000540438 ZNF347Q96SE7 839 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 DSN1Q9H410 356 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 EPHX3Q9H6B9 360 aa15.98■□□□□ 0.15
USP28-208ENST00000540438 TRIM64BA6NI03 449 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 KMOO15229 486 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 PRKNO60260 465 aaPredicted RBP15.97■□□□□ 0.15
USP28-208ENST00000540438 ANXA8P13928 327 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 INAVAQ3KP66 663 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 PODNL1Q6PEZ8 512 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 SPATC1Q76KD6 591 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 CYP4Z2PQ8N1L4 340 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 GOT1L1Q8NHS2 421 aaPredicted RBP15.97■□□□□ 0.15
USP28-208ENST00000540438 SLC9A6Q92581 669 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 SLC38A4Q969I6 547 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 ZNF566Q969W8 418 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 SLC35G5Q96KT7 338 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 AMDHD1Q96NU7 426 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 GABARAPL3Q9BY60 117 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 RBCK1Q9BYM8 510 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 ICKQ9UPZ9 632 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 ALOX12P18054 663 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 ELAVL4P26378 380 aaKnown RBP15.97■□□□□ 0.15
USP28-208ENST00000540438 PEBP1P30086 187 aaKnown RBP15.97■□□□□ 0.15
USP28-208ENST00000540438 IGFALSP35858 605 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 PPM1FP49593 454 aaPredicted RBP15.97■□□□□ 0.15
USP28-208ENST00000540438 PRDX1Q06830 199 aaKnown RBP15.97■□□□□ 0.15
USP28-208ENST00000540438 FADDQ13158 208 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 DEFB134Q4QY38 66 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 WDR34Q96EX3 536 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 PITX2Q99697 317 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 MAPKAP1Q9BPZ7 522 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 SLC17A9Q9BYT1 436 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 PLA2G12AQ9BZM1 189 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 APOBEC3BQ9UH17 382 aaKnown RBP15.97■□□□□ 0.15
USP28-208ENST00000540438 SLC35F4A4IF30 521 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 SULT1C4O75897 302 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 CRB2Q5IJ48 1285 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 UNC5DQ6UXZ4 953 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 PRSS41Q7RTY9 318 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 SETD7Q8WTS6 366 aaKnown RBP15.97■□□□□ 0.15
USP28-208ENST00000540438 UBE2E3Q969T4 207 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 TMEM38AQ9H6F2 299 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 HMG20AQ9NP66 347 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 TOR4AQ9NXH8 423 aa15.97■□□□□ 0.15
USP28-208ENST00000540438 DSCR3O14972 297 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 RNGTTO60942 597 aaKnown RBP15.96■□□□□ 0.15
USP28-208ENST00000540438 AIFM1O95831 613 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 CBLP22681 906 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms