RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 SLC37A1P57057 533 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 MAP4K2Q12851 820 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 NR6A1Q15406 480 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 PRSS53Q2L4Q9 553 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 PRICKLE4Q2TBC4 344 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 XKR7Q5GH72 579 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 C9orf40Q8IXQ3 194 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 ZNF781Q8N8C0 355 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 NUBPLQ8TB37 319 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 EGLN2Q96KS0 407 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 CCT7Q99832 543 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 ASF1BQ9NVP2 202 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 TAS2R7Q9NYW3 318 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 LRFN1Q9P244 771 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 HAO1Q9UJM8 370 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 RAP2CQ9Y3L5 183 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 PCDHGB6Q9Y5F9 930 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 COPG1Q9Y678 874 aaKnown RBP18.43■□□□□ 0.54
CPSF1-209ENST00000532725 ZNF780BQ9Y6R6 833 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 CROCCQ5TZA2 2017 aa18.42■□□□□ 0.54
CPSF1-209ENST00000532725 GCN1Q92616 2671 aaKnown RBP18.42■□□□□ 0.54
CPSF1-209ENST00000532725 WWP2O00308 870 aa18.42■□□□□ 0.54
CPSF1-209ENST00000532725 NT5EP21589 574 aa18.42■□□□□ 0.54
CPSF1-209ENST00000532725 RPL14P50914 215 aaKnown RBP18.42■□□□□ 0.54
CPSF1-209ENST00000532725 OC90Q02509 493 aaPredicted RBP18.42■□□□□ 0.54
CPSF1-209ENST00000532725 BST1Q10588 318 aa18.42■□□□□ 0.54
CPSF1-209ENST00000532725 CEBPEQ15744 281 aa18.42■□□□□ 0.54
CPSF1-209ENST00000532725 ZNF766Q5HY98 468 aa18.42■□□□□ 0.54
CPSF1-209ENST00000532725 GALNT12Q8IXK2 581 aa18.42■□□□□ 0.54
CPSF1-209ENST00000532725 CCDC116Q8IYX3 515 aa18.42■□□□□ 0.54
CPSF1-209ENST00000532725 ZNF615Q8N8J6 731 aa18.42■□□□□ 0.54
CPSF1-209ENST00000532725 SUN3Q8TAQ9 357 aa18.42■□□□□ 0.54
CPSF1-209ENST00000532725 MGARPQ8TDB4 240 aa18.42■□□□□ 0.54
CPSF1-209ENST00000532725 EXOSC8Q96B26 276 aaKnown RBP18.42■□□□□ 0.54
CPSF1-209ENST00000532725 CTHRC1Q96CG8 243 aa18.42■□□□□ 0.54
CPSF1-209ENST00000532725 SCMH1Q96GD3 660 aa18.42■□□□□ 0.54
CPSF1-209ENST00000532725 ATP6V1G3Q96LB4 118 aa18.42■□□□□ 0.54
CPSF1-209ENST00000532725 SLC35C2Q9NQQ7 365 aa18.42■□□□□ 0.54
CPSF1-209ENST00000532725 NKIRAS1Q9NYS0 192 aa18.42■□□□□ 0.54
CPSF1-209ENST00000532725 ZNF639Q9UID6 485 aa18.42■□□□□ 0.54
CPSF1-209ENST00000532725 TMED5Q9Y3A6 229 aa18.42■□□□□ 0.54
CPSF1-209ENST00000532725 ZNF354AO60765 605 aaPredicted RBP18.41■□□□□ 0.54
CPSF1-209ENST00000532725 SSTR4P31391 388 aa18.41■□□□□ 0.54
CPSF1-209ENST00000532725 SSR4P51571 173 aa18.41■□□□□ 0.54
CPSF1-209ENST00000532725 MPEG1Q2M385 716 aa18.41■□□□□ 0.54
CPSF1-209ENST00000532725 GALNTL6Q49A17 601 aa18.41■□□□□ 0.54
CPSF1-209ENST00000532725 TTMPQ5BVD1 217 aa18.41■□□□□ 0.54
CPSF1-209ENST00000532725 PIGGQ5H8A4 983 aa18.41■□□□□ 0.54
CPSF1-209ENST00000532725 SLC25A25Q6KCM7 469 aa18.41■□□□□ 0.54
CPSF1-209ENST00000532725 FAM111BQ6SJ93 734 aa18.41■□□□□ 0.54
CPSF1-209ENST00000532725 RNF111Q6ZNA4 994 aa18.41■□□□□ 0.54
CPSF1-209ENST00000532725 IKBIPQ70UQ0 350 aa18.41■□□□□ 0.54
CPSF1-209ENST00000532725 SAMD14Q8IZD0 417 aaPredicted RBP18.41■□□□□ 0.54
CPSF1-209ENST00000532725 TMEM156Q8N614 296 aa18.41■□□□□ 0.54
CPSF1-209ENST00000532725 HORMAD2Q8N7B1 307 aa18.41■□□□□ 0.54
CPSF1-209ENST00000532725 PPP3R2Q96LZ3 170 aa18.41■□□□□ 0.54
CPSF1-209ENST00000532725 TAAR6Q96RI8 345 aa18.41■□□□□ 0.54
CPSF1-209ENST00000532725 RASL10BQ96S79 203 aa18.41■□□□□ 0.54
CPSF1-209ENST00000532725 SDAD1Q9NVU7 687 aaKnown RBP eCLIP18.41■□□□□ 0.54
CPSF1-209ENST00000532725 MAT2BQ9NZL9 334 aa18.41■□□□□ 0.54
CPSF1-209ENST00000532725 GIMAP2Q9UG22 337 aa18.41■□□□□ 0.54
CPSF1-209ENST00000532725 SHANK1Q9Y566 2161 aa18.41■□□□□ 0.54
CPSF1-209ENST00000532725 ATP6AP2A0A1C7CYW4 349 aa18.4■□□□□ 0.54
CPSF1-209ENST00000532725 OR6C76A6NM76 312 aa18.4■□□□□ 0.54
CPSF1-209ENST00000532725 PEX11AO75192 247 aa18.4■□□□□ 0.54
CPSF1-209ENST00000532725 SKAP2O75563 359 aaPredicted RBP18.4■□□□□ 0.54
CPSF1-209ENST00000532725 ATP6AP2O75787 350 aa18.4■□□□□ 0.54
CPSF1-209ENST00000532725 WISP1O95388 367 aa18.4■□□□□ 0.54
CPSF1-209ENST00000532725 JUNP05412 331 aaKnown RBP18.4■□□□□ 0.54
CPSF1-209ENST00000532725 SP1P08047 785 aa18.4■□□□□ 0.54
CPSF1-209ENST00000532725 CD46P15529 392 aa18.4■□□□□ 0.54
CPSF1-209ENST00000532725 SDC1P18827 310 aa18.4■□□□□ 0.54
CPSF1-209ENST00000532725 RPL38P63173 70 aaKnown RBP18.4■□□□□ 0.54
CPSF1-209ENST00000532725 C6orf136Q5SQH8 315 aa18.4■□□□□ 0.54
CPSF1-209ENST00000532725 TICAM1Q8IUC6 712 aa18.4■□□□□ 0.54
CPSF1-209ENST00000532725 LRRC25Q8N386 305 aaPredicted RBP18.4■□□□□ 0.54
CPSF1-209ENST00000532725 ADCY4Q8NFM4 1077 aa18.4■□□□□ 0.54
CPSF1-209ENST00000532725 OR7G1Q8NGA0 311 aa18.4■□□□□ 0.54
CPSF1-209ENST00000532725 CDC26Q8NHZ8 85 aa18.4■□□□□ 0.54
CPSF1-209ENST00000532725 GRHL3Q8TE85 626 aa18.4■□□□□ 0.54
CPSF1-209ENST00000532725 HES7Q9BYE0 225 aa18.4■□□□□ 0.54
CPSF1-209ENST00000532725 OR10A5Q9H207 317 aa18.4■□□□□ 0.54
CPSF1-209ENST00000532725 BAIAP2L1Q9UHR4 511 aa18.4■□□□□ 0.54
CPSF1-209ENST00000532725 MYO1GB0I1T2 1018 aa18.39■□□□□ 0.53
CPSF1-209ENST00000532725 SNNO75324 88 aaPredicted RBP18.39■□□□□ 0.53
CPSF1-209ENST00000532725 SASH3O75995 380 aa18.39■□□□□ 0.53
CPSF1-209ENST00000532725 BCKDHAP12694 445 aa18.39■□□□□ 0.53
CPSF1-209ENST00000532725 PTGER1P34995 402 aa18.39■□□□□ 0.53
CPSF1-209ENST00000532725 TRMT12Q53H54 448 aaKnown RBP18.39■□□□□ 0.53
CPSF1-209ENST00000532725 SLC29A4Q7RTT9 530 aa18.39■□□□□ 0.53
CPSF1-209ENST00000532725 FAR1Q8WVX9 515 aa18.39■□□□□ 0.53
CPSF1-209ENST00000532725 BRINP2Q9C0B6 783 aa18.39■□□□□ 0.53
CPSF1-209ENST00000532725 PFDN4Q9NQP4 134 aa18.39■□□□□ 0.53
CPSF1-209ENST00000532725 KLHL1Q9NR64 748 aa18.39■□□□□ 0.53
CPSF1-209ENST00000532725 PNPOQ9NVS9 261 aa18.39■□□□□ 0.53
CPSF1-209ENST00000532725 THAP1Q9NVV9 213 aa18.39■□□□□ 0.53
CPSF1-209ENST00000532725 MYO18BQ8IUG5 2567 aa18.38■□□□□ 0.53
CPSF1-209ENST00000532725 SLC25A12O75746 678 aa18.38■□□□□ 0.53
CPSF1-209ENST00000532725 OR6B1O95007 311 aa18.38■□□□□ 0.53
CPSF1-209ENST00000532725 NADKO95544 446 aaPredicted RBP18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms