RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 ZDHHC19Q8WVZ1 309 aaPredicted RBP19.73■□□□□ 0.75
VPS28-208ENST00000527797 OR1F2PQ96R84 312 aa19.73■□□□□ 0.75
VPS28-208ENST00000527797 EFHD1Q9BUP0 239 aa19.73■□□□□ 0.75
VPS28-208ENST00000527797 CCM2LQ9NUG4 571 aaPredicted RBP19.73■□□□□ 0.75
VPS28-208ENST00000527797 OCIAD1Q9NX40 245 aa19.73■□□□□ 0.75
VPS28-208ENST00000527797 A0A0C4DFX4 3053 aa19.72■□□□□ 0.75
VPS28-208ENST00000527797 GPR179Q6PRD1 2367 aa19.72■□□□□ 0.75
VPS28-208ENST00000527797 SCRG1O75711 98 aa19.72■□□□□ 0.75
VPS28-208ENST00000527797 CDC123O75794 336 aaPredicted RBP19.72■□□□□ 0.75
VPS28-208ENST00000527797 ATXN8OSP0DMR3 200 aa19.72■□□□□ 0.75
VPS28-208ENST00000527797 NT5EP21589 574 aa19.72■□□□□ 0.75
VPS28-208ENST00000527797 IL10P22301 178 aa19.72■□□□□ 0.75
VPS28-208ENST00000527797 ANXA11P50995 505 aaKnown RBP19.72■□□□□ 0.75
VPS28-208ENST00000527797 RPS26P62854 115 aaKnown RBP19.72■□□□□ 0.75
VPS28-208ENST00000527797 C1orf189Q5VU69 101 aa19.72■□□□□ 0.75
VPS28-208ENST00000527797 TNFAIP8L2Q6P589 184 aaPredicted RBP19.72■□□□□ 0.75
VPS28-208ENST00000527797 RBM44Q6ZP01 1051 aaKnown RBP19.72■□□□□ 0.75
VPS28-208ENST00000527797 NUP43Q8NFH3 380 aa19.72■□□□□ 0.75
VPS28-208ENST00000527797 POP5Q969H6 163 aaKnown RBP19.72■□□□□ 0.75
VPS28-208ENST00000527797 MAL2Q969L2 176 aa19.72■□□□□ 0.75
VPS28-208ENST00000527797 PARD6AQ9NPB6 346 aa19.72■□□□□ 0.75
VPS28-208ENST00000527797 DDX18Q9NVP1 670 aaKnown RBP19.72■□□□□ 0.75
VPS28-208ENST00000527797 THUMPD1Q9NXG2 353 aaKnown RBP19.72■□□□□ 0.75
VPS28-208ENST00000527797 PTGFRNQ9P2B2 879 aa19.72■□□□□ 0.75
VPS28-208ENST00000527797 STOML1Q9UBI4 398 aa19.72■□□□□ 0.75
VPS28-208ENST00000527797 TRPC4Q9UBN4 977 aa19.72■□□□□ 0.75
VPS28-208ENST00000527797 ANAPC2Q9UJX6 822 aa19.72■□□□□ 0.75
VPS28-208ENST00000527797 AURKCQ9UQB9 309 aa19.72■□□□□ 0.75
VPS28-208ENST00000527797 HYAL3O43820 417 aaPredicted RBP19.71■□□□□ 0.75
VPS28-208ENST00000527797 OR10H2O60403 315 aa19.71■□□□□ 0.75
VPS28-208ENST00000527797 BMP10O95393 424 aa19.71■□□□□ 0.75
VPS28-208ENST00000527797 HBQ1P09105 142 aa19.71■□□□□ 0.75
VPS28-208ENST00000527797 MATN1P21941 496 aa19.71■□□□□ 0.75
VPS28-208ENST00000527797 SESN3P58005 492 aa19.71■□□□□ 0.75
VPS28-208ENST00000527797 BTG2P78543 158 aa19.71■□□□□ 0.75
VPS28-208ENST00000527797 IGLV3-21P80748 117 aaPredicted RBP19.71■□□□□ 0.75
VPS28-208ENST00000527797 E2F1Q01094 437 aa19.71■□□□□ 0.75
VPS28-208ENST00000527797 ILKQ13418 452 aa19.71■□□□□ 0.75
VPS28-208ENST00000527797 IL11RAQ14626 422 aa19.71■□□□□ 0.75
VPS28-208ENST00000527797 ZNF628Q5EBL2 1059 aa19.71■□□□□ 0.75
VPS28-208ENST00000527797 ARHGAP40Q5TG30 622 aa19.71■□□□□ 0.75
VPS28-208ENST00000527797 MED25Q71SY5 747 aa19.71■□□□□ 0.75
VPS28-208ENST00000527797 ADGRG5Q8IZF4 528 aa19.71■□□□□ 0.75
VPS28-208ENST00000527797 OR7G2Q8NG99 324 aa19.71■□□□□ 0.75
VPS28-208ENST00000527797 SLCO4A1Q96BD0 722 aa19.71■□□□□ 0.75
VPS28-208ENST00000527797 ALOXE3Q9BYJ1 711 aa19.71■□□□□ 0.75
VPS28-208ENST00000527797 FAM86C1Q9NVL1 165 aa19.71■□□□□ 0.75
VPS28-208ENST00000527797 LAMA1P25391 3075 aa19.71■□□□□ 0.75
VPS28-208ENST00000527797 UPK1AO00322 258 aa19.7■□□□□ 0.74
VPS28-208ENST00000527797 ARAFP10398 606 aa19.7■□□□□ 0.74
VPS28-208ENST00000527797 NBL1P41271 181 aa19.7■□□□□ 0.74
VPS28-208ENST00000527797 KHKP50053 298 aa19.7■□□□□ 0.74
VPS28-208ENST00000527797 PDX1P52945 283 aa19.7■□□□□ 0.74
VPS28-208ENST00000527797 MRPS35P82673 323 aaKnown RBP19.7■□□□□ 0.74
VPS28-208ENST00000527797 TXNL4AP83876 142 aaKnown RBP19.7■□□□□ 0.74
VPS28-208ENST00000527797 SCARB2Q14108 478 aa19.7■□□□□ 0.74
VPS28-208ENST00000527797 CCDC157Q569K6 752 aa19.7■□□□□ 0.74
VPS28-208ENST00000527797 IRAK1BP1Q5VVH5 260 aa19.7■□□□□ 0.74
VPS28-208ENST00000527797 PWWP2BQ6NUJ5 590 aa19.7■□□□□ 0.74
VPS28-208ENST00000527797 ZC3H7AQ8IWR0 971 aaKnown RBP19.7■□□□□ 0.74
VPS28-208ENST00000527797 SLC30A8Q8IWU4 369 aa19.7■□□□□ 0.74
VPS28-208ENST00000527797 OR2L13Q8N349 312 aa19.7■□□□□ 0.74
VPS28-208ENST00000527797 ZNF675Q8TD23 568 aa19.7■□□□□ 0.74
VPS28-208ENST00000527797 PPWD1Q96BP3 646 aaKnown RBP19.7■□□□□ 0.74
VPS28-208ENST00000527797 CLIP3Q96DZ5 547 aa19.7■□□□□ 0.74
VPS28-208ENST00000527797 RBM18Q96H35 190 aaKnown RBP19.7■□□□□ 0.74
VPS28-208ENST00000527797 OR51I1Q9H343 314 aa19.7■□□□□ 0.74
VPS28-208ENST00000527797 DCAF13Q9NV06 445 aaKnown RBP19.7■□□□□ 0.74
VPS28-208ENST00000527797 ARMC1Q9NVT9 282 aa19.7■□□□□ 0.74
VPS28-208ENST00000527797 NTMQ9P121 344 aa19.7■□□□□ 0.74
VPS28-208ENST00000527797 JRKO75564 520 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 RFPL3O75679 317 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 SERPINA1P01009 418 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 HMGN2P05204 90 aaKnown RBP19.69■□□□□ 0.74
VPS28-208ENST00000527797 IFI6P09912 130 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 FGF5P12034 268 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 CCKBRP32239 447 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 KDELR2P33947 212 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 CDK6Q00534 326 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 BIKQ13323 160 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 TBCELQ5QJ74 424 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 INTS11Q5TA45 600 aaKnown RBP19.69■□□□□ 0.74
VPS28-208ENST00000527797 ST13P4Q8IZP2 240 aaPredicted RBP19.69■□□□□ 0.74
VPS28-208ENST00000527797 EID3Q8N140 333 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 NFKBIDQ8NI38 313 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 MIPOL1Q8TD10 442 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 UGT2B28Q9BY64 529 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 ANKRA2Q9H9E1 313 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 A4GALTQ9NPC4 353 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 LANCL2Q9NS86 450 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 OLAHQ9NV23 265 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 AKAP7Q9P0M2 348 aaPredicted RBP19.69■□□□□ 0.74
VPS28-208ENST00000527797 MMACHCQ9Y4U1 282 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 ADAMTS20P59510 1910 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 A0A087WV62 115 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 HMGN4O00479 90 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 POLR1CO15160 346 aaPredicted RBP19.69■□□□□ 0.74
VPS28-208ENST00000527797 TIAF1O95411 115 aa19.69■□□□□ 0.74
VPS28-208ENST00000527797 EEF1A2Q05639 463 aaKnown RBP19.69■□□□□ 0.74
VPS28-208ENST00000527797 SERTAD2Q14140 314 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms