RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 CRHP06850 196 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 ASGR1P07306 291 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 FGF4P08620 206 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 FAM86B2P0C5J1 330 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 OR4E1P0C645 316 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 HAPLN1P10915 354 aaPredicted RBP5.53□□□□□ -1.52
CD44-225ENST00000527326 ODC1P11926 461 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 UGT2B7P16662 529 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 LBPP18428 481 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 MAPK3P27361 379 aaPredicted RBP5.53□□□□□ -1.52
CD44-225ENST00000527326 G0S2P27469 103 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 DDTP30046 118 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 PMELP40967 661 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 MAN2A2P49641 1150 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 CSRP3P50461 194 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 ADPRHP54922 357 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 TGFB2P61812 414 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 SKP1P63208 163 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 HTRA4P83105 476 aaPredicted RBP5.53□□□□□ -1.52
CD44-225ENST00000527326 IRF9Q00978 393 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 MBTD1Q05BQ5 628 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 ZNF543Q08ER8 600 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 SREBF2Q12772 1141 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 RPS6KA2Q15349 733 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 TOMM34Q15785 309 aaPredicted RBP5.53□□□□□ -1.52
CD44-225ENST00000527326 TSTQ16762 297 aaKnown RBP5.53□□□□□ -1.52
CD44-225ENST00000527326 VPS26BQ4G0F5 336 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 PLA1AQ53H76 456 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 SOWAHCQ53LP3 525 aaPredicted RBP5.53□□□□□ -1.52
CD44-225ENST00000527326 ZNF628Q5EBL2 1059 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 SGO1Q5FBB7 561 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 SLC35D3Q5M8T2 416 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 BCL2L15Q5TBC7 163 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 ATPAF1Q5TC12 328 aaPredicted RBP5.53□□□□□ -1.52
CD44-225ENST00000527326 LAIR1Q6GTX8 287 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 FSTL4Q6MZW2 842 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 ARMC6Q6NXE6 501 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 CLEC2AQ6UVW9 174 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 GCNT7Q6ZNI0 430 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 C1orf186Q6ZWK4 172 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 SPATA19Q7Z5L4 167 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 RABEPKQ7Z6M1 372 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.53□□□□□ -1.52
CD44-225ENST00000527326 CUZD1Q86UP6 607 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 TGIF2LXQ8IUE1 241 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 MISPQ8IVT2 679 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 SLC35F3Q8IY50 421 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 ZNF444Q8N0Y2 327 aaPredicted RBP5.53□□□□□ -1.52
CD44-225ENST00000527326 SLC44A3Q8N4M1 653 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 C15orf54Q8N8G6 183 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 SLC44A5Q8NCS7 719 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 PPHLN1Q8NEY8 458 aaKnown RBP5.53□□□□□ -1.52
CD44-225ENST00000527326 BPIFCQ8NFQ6 507 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 OR4A15Q8NGL6 344 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 OR5M9Q8NGP3 310 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 OR9I1Q8NGQ6 314 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 OR13C3Q8NGS6 347 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 SEMA4DQ92854 862 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 RAB24Q969Q5 203 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 ULK4Q96C45 1275 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 MRPL38Q96DV4 380 aaKnown RBP5.53□□□□□ -1.52
CD44-225ENST00000527326 ZNF419Q96HQ0 510 aaPredicted RBP5.53□□□□□ -1.52
CD44-225ENST00000527326 MCEEQ96PE7 176 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 TMEM209Q96SK2 561 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 FIZ1Q96SL8 496 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 PKP4Q99569 1192 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 TCF25Q9BQ70 676 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 SOSTQ9BQB4 213 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 CNPPD1Q9BV87 410 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 GGACTQ9BVM4 153 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 SPATA5L1Q9BVQ7 753 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 TAPBPLQ9BX59 468 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 CDCA4Q9BXL8 241 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 BARHL1Q9BZE3 327 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 ARHGAP39Q9C0H5 1083 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 EGLN1Q9GZT9 426 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 SLC38A1Q9H2H9 487 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 DPAGT1Q9H3H5 408 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 PIGMQ9H3S5 423 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 RIMS4Q9H426 269 aaPredicted RBP5.53□□□□□ -1.52
CD44-225ENST00000527326 PRDM12Q9H4Q4 367 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 DHX35Q9H5Z1 703 aaKnown RBP5.53□□□□□ -1.52
CD44-225ENST00000527326 RIOX1Q9H6W3 641 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 PPP1R3EQ9H7J1 279 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 LTB4R2Q9NPC1 389 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 ASCL3Q9NQ33 180 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 SDR39U1Q9NRG7 319 aaPredicted RBP5.53□□□□□ -1.52
CD44-225ENST00000527326 SAE1Q9UBE0 346 aaPredicted RBP5.53□□□□□ -1.52
CD44-225ENST00000527326 PISDQ9UG56 409 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 CNTN6Q9UQ52 1028 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 CARHSP1Q9Y2V2 147 aaKnown RBP5.53□□□□□ -1.52
CD44-225ENST00000527326 V9GYQ6 96 aa5.53□□□□□ -1.52
CD44-225ENST00000527326 TRBV23OR9-2A0A075B6M9 112 aa5.52□□□□□ -1.53
CD44-225ENST00000527326 A0A087X1B8 175 aa5.52□□□□□ -1.53
CD44-225ENST00000527326 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP5.52□□□□□ -1.53
CD44-225ENST00000527326 LOC102723532A0A0G2JNH3 316 aa5.52□□□□□ -1.53
CD44-225ENST00000527326 GNG14A0A1W2PPG7 69 aa5.52□□□□□ -1.53
CD44-225ENST00000527326 PLSCR5A0PG75 271 aa5.52□□□□□ -1.53
CD44-225ENST00000527326 HYKKA2RU49 373 aa5.52□□□□□ -1.53
CD44-225ENST00000527326 A6NCN8 305 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms