RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 EXOSC7Q15024 291 aaKnown RBP12.8□□□□□ -0.36
CD44-224ENST00000526669 CEBPEQ15744 281 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 DPY19L1Q2PZI1 675 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 PRICKLE4Q2TBC4 344 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 DEFB109BQ30KR1 87 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 VPS26BQ4G0F5 336 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 CPZQ66K79 652 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 BLOC1S3Q6QNY0 202 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 TMEM107Q6UX40 140 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 DNAJC14Q6Y2X3 702 aaPredicted RBP12.8□□□□□ -0.36
CD44-224ENST00000526669 SZRD1Q7Z422 152 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 TREML1Q86YW5 311 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 GALNT12Q8IXK2 581 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 SAMD14Q8IZD0 417 aaPredicted RBP12.8□□□□□ -0.36
CD44-224ENST00000526669 POU5F2Q8N7G0 328 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 SIMC1Q8NDZ2 872 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 OR8J2Q8NGG1 315 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 OR4A15Q8NGL6 344 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 OR14A16Q8NHC5 309 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 ZFP28Q8NHY6 868 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 SLC2A12Q8TD20 617 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 RIT1Q92963 219 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 NCLNQ969V3 563 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 ZBED6CLQ96FA7 236 aaPredicted RBP12.8□□□□□ -0.36
CD44-224ENST00000526669 LPAR4Q99677 370 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 PELOQ9BRX2 385 aaKnown RBP12.8□□□□□ -0.36
CD44-224ENST00000526669 CCDC106Q9BWC9 280 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 OR8D2Q9GZM6 311 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 ZNF700Q9H0M5 742 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 MYLK2Q9H1R3 596 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 CXorf21Q9HAI6 301 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 MAT2BQ9NZL9 334 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 MAN2B2Q9Y2E5 1009 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 CLCA3PQ9Y6N3 262 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 LAMA5O15230 3695 aa12.8□□□□□ -0.36
CD44-224ENST00000526669 ASPDHA6ND91 283 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 CCDC154A6NI56 674 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 SCN2BO60939 215 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 NME6O75414 186 aaPredicted RBP12.79□□□□□ -0.36
CD44-224ENST00000526669 DDAH2O95865 285 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 ATP1B1P05026 303 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 IL6P05231 212 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 SSTR4P31391 388 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 SOX18P35713 384 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 MC3RP41968 323 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 CDKN2CP42773 168 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 SLC26A5P58743 744 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 IRX1P78414 480 aaPredicted RBP12.79□□□□□ -0.36
CD44-224ENST00000526669 MGAT2Q10469 447 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 BIKQ13323 160 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 RCAN2Q14206 197 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 BTBD16Q32M84 506 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 TRMT12Q53H54 448 aaKnown RBP12.79□□□□□ -0.36
CD44-224ENST00000526669 ZNF628Q5EBL2 1059 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 ANXA8L1Q5VT79 327 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 SLC2A7Q6PXP3 512 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 NDUFAF7Q7L592 441 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 SNX32Q86XE0 403 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 CLEC4FQ8N1N0 589 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 KIF2BQ8N4N8 673 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 ZSCAN1Q8NBB4 408 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 OR7G2Q8NG99 324 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 ERP27Q96DN0 273 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 INPP5KQ9BT40 448 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 CXorf36Q9H7Y0 433 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 ACSS1Q9NUB1 689 aaPredicted RBP12.79□□□□□ -0.36
CD44-224ENST00000526669 FAM120CQ9NX05 1096 aaKnown RBP12.79□□□□□ -0.36
CD44-224ENST00000526669 BCAP29Q9UHQ4 241 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 POLHQ9Y253 713 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 SNX8Q9Y5X2 465 aa12.79□□□□□ -0.36
CD44-224ENST00000526669 TMEM8BA6NDV4 472 aa12.78□□□□□ -0.36
CD44-224ENST00000526669 RNASET2O00584 256 aaKnown RBP12.78□□□□□ -0.36
CD44-224ENST00000526669 DCTN3O75935 186 aa12.78□□□□□ -0.36
CD44-224ENST00000526669 HPP00738 406 aa12.78□□□□□ -0.36
CD44-224ENST00000526669 GSNP06396 782 aa12.78□□□□□ -0.36
CD44-224ENST00000526669 SNRPB2P08579 225 aaKnown RBP12.78□□□□□ -0.36
CD44-224ENST00000526669 FREM3P0C091 2139 aa12.78□□□□□ -0.36
CD44-224ENST00000526669 HBA1P69905 142 aa12.78□□□□□ -0.36
CD44-224ENST00000526669 SPRED3Q2MJR0 410 aa12.78□□□□□ -0.36
CD44-224ENST00000526669 PAGE3Q5JUK9 113 aa12.78□□□□□ -0.36
CD44-224ENST00000526669 VWA5B2Q8N398 1253 aa12.78□□□□□ -0.36
CD44-224ENST00000526669 NFAM1Q8NET5 270 aaPredicted RBP12.78□□□□□ -0.36
CD44-224ENST00000526669 OR5AK3PQ8NH89 298 aa12.78□□□□□ -0.36
CD44-224ENST00000526669 ZNF721Q8TF20 911 aa12.78□□□□□ -0.36
CD44-224ENST00000526669 OR5P2Q8WZ92 322 aa12.78□□□□□ -0.36
CD44-224ENST00000526669 DAZLQ92904 295 aaKnown RBP12.78□□□□□ -0.36
CD44-224ENST00000526669 CRELD1Q96HD1 420 aa12.78□□□□□ -0.36
CD44-224ENST00000526669 TUBB6Q9BUF5 446 aa12.78□□□□□ -0.36
CD44-224ENST00000526669 NUDT9Q9BW91 350 aa12.78□□□□□ -0.36
CD44-224ENST00000526669 SLC52A3Q9NQ40 469 aa12.78□□□□□ -0.36
CD44-224ENST00000526669 SIRT3Q9NTG7 399 aaPredicted RBP12.78□□□□□ -0.36
CD44-224ENST00000526669 SSUH2Q9Y2M2 353 aa12.78□□□□□ -0.36
CD44-224ENST00000526669 MGAQ8IWI9 3026 aa12.78□□□□□ -0.36
CD44-224ENST00000526669 TRBV11-1A0A0K0K1C0 115 aa12.77□□□□□ -0.37
CD44-224ENST00000526669 LOC100653049A0A140TA62 436 aa12.77□□□□□ -0.37
CD44-224ENST00000526669 PRSS51A0A1B0GVH4 220 aa12.77□□□□□ -0.37
CD44-224ENST00000526669 SYNDIG1LA6NDD5 238 aa12.77□□□□□ -0.37
CD44-224ENST00000526669 PCDH17O14917 1159 aa12.77□□□□□ -0.37
CD44-224ENST00000526669 DYRK3O43781 588 aa12.77□□□□□ -0.37
CD44-224ENST00000526669 PRKNO60260 465 aaPredicted RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms