RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 GABPB1Q06547 395 aaPredicted RBP14.31□□□□□ -0.12
LSM1-203ENST00000520755 PCOLCEQ15113 449 aa14.31□□□□□ -0.12
LSM1-203ENST00000520755 LTB4RQ15722 352 aa14.31□□□□□ -0.12
LSM1-203ENST00000520755 VPS26BQ4G0F5 336 aa14.31□□□□□ -0.12
LSM1-203ENST00000520755 BORAQ6PGQ7 559 aa14.31□□□□□ -0.12
LSM1-203ENST00000520755 SLC2A7Q6PXP3 512 aa14.31□□□□□ -0.12
LSM1-203ENST00000520755 NDUFAF7Q7L592 441 aa14.31□□□□□ -0.12
LSM1-203ENST00000520755 EXTL1Q92935 676 aa14.31□□□□□ -0.12
LSM1-203ENST00000520755 FER1L6-AS2Q96M78 137 aa14.31□□□□□ -0.12
LSM1-203ENST00000520755 AMDHD1Q96NU7 426 aa14.31□□□□□ -0.12
LSM1-203ENST00000520755 ALOXE3Q9BYJ1 711 aa14.31□□□□□ -0.12
LSM1-203ENST00000520755 ZNF700Q9H0M5 742 aa14.31□□□□□ -0.12
LSM1-203ENST00000520755 GLIPR2Q9H4G4 154 aa14.31□□□□□ -0.12
LSM1-203ENST00000520755 PNO1Q9NRX1 252 aaKnown RBP14.31□□□□□ -0.12
LSM1-203ENST00000520755 FAM120CQ9NX05 1096 aaKnown RBP14.31□□□□□ -0.12
LSM1-203ENST00000520755 ENTPD4Q9Y227 616 aa14.31□□□□□ -0.12
LSM1-203ENST00000520755 KCNMB2Q9Y691 235 aa14.31□□□□□ -0.12
LSM1-203ENST00000520755 MED13Q9UHV7 2174 aa14.3□□□□□ -0.12
LSM1-203ENST00000520755 CCDC154A6NI56 674 aa14.3□□□□□ -0.12
LSM1-203ENST00000520755 RNASET2O00584 256 aaKnown RBP14.3□□□□□ -0.12
LSM1-203ENST00000520755 CFLARO15519 480 aa14.3□□□□□ -0.12
LSM1-203ENST00000520755 C6orf47O95873 294 aa14.3□□□□□ -0.12
LSM1-203ENST00000520755 HPP00738 406 aa14.3□□□□□ -0.12
LSM1-203ENST00000520755 IFNA16P05015 189 aa14.3□□□□□ -0.12
LSM1-203ENST00000520755 CDKN2CP42773 168 aa14.3□□□□□ -0.12
LSM1-203ENST00000520755 CDK9P50750 372 aaKnown RBP14.3□□□□□ -0.12
LSM1-203ENST00000520755 XKP51811 444 aa14.3□□□□□ -0.12
LSM1-203ENST00000520755 TBR1Q16650 682 aa14.3□□□□□ -0.12
LSM1-203ENST00000520755 PAGE3Q5JUK9 113 aa14.3□□□□□ -0.12
LSM1-203ENST00000520755 DCAF10Q5QP82 559 aa14.3□□□□□ -0.12
LSM1-203ENST00000520755 PAPD4Q6PIY7 484 aaKnown RBP14.3□□□□□ -0.12
LSM1-203ENST00000520755 ZNF551Q7Z340 670 aaPredicted RBP14.3□□□□□ -0.12
LSM1-203ENST00000520755 LRRC25Q8N386 305 aaPredicted RBP14.3□□□□□ -0.12
LSM1-203ENST00000520755 AMER2Q8N7J2 671 aa14.3□□□□□ -0.12
LSM1-203ENST00000520755 TMEM102Q8N9M5 508 aaPredicted RBP14.3□□□□□ -0.12
LSM1-203ENST00000520755 CLEC1AQ8NC01 280 aa14.3□□□□□ -0.12
LSM1-203ENST00000520755 OR9A2Q8NGT5 310 aa14.3□□□□□ -0.12
LSM1-203ENST00000520755 TSPEARQ8WU66 669 aa14.3□□□□□ -0.12
LSM1-203ENST00000520755 CCDC115Q96NT0 180 aa14.3□□□□□ -0.12
LSM1-203ENST00000520755 OR52E6Q96RD3 313 aa14.3□□□□□ -0.12
LSM1-203ENST00000520755 PRPF18Q99633 342 aaKnown RBP14.3□□□□□ -0.12
LSM1-203ENST00000520755 LPAR4Q99677 370 aa14.3□□□□□ -0.12
LSM1-203ENST00000520755 WDR77Q9BQA1 342 aaPredicted RBP14.3□□□□□ -0.12
LSM1-203ENST00000520755 INPP5KQ9BT40 448 aa14.3□□□□□ -0.12
LSM1-203ENST00000520755 ING2Q9H160 280 aa14.3□□□□□ -0.12
LSM1-203ENST00000520755 SLC6A13Q9NSD5 602 aa14.3□□□□□ -0.12
LSM1-203ENST00000520755 SIRT3Q9NTG7 399 aaPredicted RBP14.3□□□□□ -0.12
LSM1-203ENST00000520755 ACSS1Q9NUB1 689 aaPredicted RBP14.3□□□□□ -0.12
LSM1-203ENST00000520755 ATAD3AQ9NVI7 634 aa14.3□□□□□ -0.12
LSM1-203ENST00000520755 A0A1W2PP18 115 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 A0A1W2PQ72 361 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 DNAJB5O75953 348 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 UBOX5O94941 541 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 CBX6O95503 412 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 ATP1B1P05026 303 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 ITGB2P05107 769 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 CT62P0C5K7 136 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 SLC35E2P0CK97 266 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 PORP16435 677 aaPredicted RBP14.29□□□□□ -0.12
LSM1-203ENST00000520755 CSNK2A2P19784 350 aaPredicted RBP14.29□□□□□ -0.12
LSM1-203ENST00000520755 PTPN6P29350 595 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 PRDX6P30041 224 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 NTSP30990 170 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 STT3AP46977 705 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 NCBP2P52298 156 aaKnown RBP eCLIP14.29□□□□□ -0.126e-6■■■■□ 21.3
LSM1-203ENST00000520755 HBA1P69905 142 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 MGAT2Q10469 447 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 HSPB3Q12988 150 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 GAB1Q13480 694 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 SERTAD2Q14140 314 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 KRT72Q14CN4 511 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 MLC1Q15049 377 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 MAPRE2Q15555 327 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 REP15Q6BDI9 236 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 DNAJC14Q6Y2X3 702 aaPredicted RBP14.29□□□□□ -0.12
LSM1-203ENST00000520755 MSANTD1Q6ZTZ1 278 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 CCDC116Q8IYX3 515 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 ST13P4Q8IZP2 240 aaPredicted RBP14.29□□□□□ -0.12
LSM1-203ENST00000520755 DOK4Q8TEW6 326 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 APOBEC4Q8WW27 367 aaKnown RBP14.29□□□□□ -0.12
LSM1-203ENST00000520755 GTF2H4Q92759 462 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 PPWD1Q96BP3 646 aaKnown RBP14.29□□□□□ -0.12
LSM1-203ENST00000520755 BBS4Q96RK4 519 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 TUBB6Q9BUF5 446 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 SLC25A23Q9BV35 468 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 ADAP2Q9NPF8 381 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 ATP13A2Q9NQ11 1180 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 GIMAP4Q9NUV9 329 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 MAT2BQ9NZL9 334 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 BTNL2Q9UIR0 455 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 PSME2Q9UL46 239 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 ZNF780BQ9Y6R6 833 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 DSPP15924 2871 aaKnown RBP14.29□□□□□ -0.12
LSM1-203ENST00000520755 CPAMD8Q8IZJ3 1885 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 DOCK10Q96BY6 2186 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 PKD1L2Q7Z442 2459 aa14.29□□□□□ -0.12
LSM1-203ENST00000520755 LOC100653049A0A140TA62 436 aa14.28□□□□□ -0.12
LSM1-203ENST00000520755 PRSS51A0A1B0GVH4 220 aa14.28□□□□□ -0.12
LSM1-203ENST00000520755 A0A1W2PRB8 838 aa14.28□□□□□ -0.12
LSM1-203ENST00000520755 DYTNA2CJ06 578 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms