RNA–Protein interactions for RNA: ENST00000514402.1

MATR3-223, Transcript of matrin 3, human

TSL 2

Gene MATR3, Length 556 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-223	ENST00000514402	OR1C1	Q15619	314 aa		2.92	□□□□□ -1.94
MATR3-223	ENST00000514402	GSG1	Q2KHT4	349 aa		2.92	□□□□□ -1.94
MATR3-223	ENST00000514402	ZNF789	Q5FWF6	425 aa		2.92	□□□□□ -1.94
MATR3-223	ENST00000514402	MPP7	Q5T2T1	576 aa		2.92	□□□□□ -1.94
MATR3-223	ENST00000514402	RAB12	Q6IQ22	244 aa		2.92	□□□□□ -1.94
MATR3-223	ENST00000514402	GALNT17	Q6IS24	598 aa		2.92	□□□□□ -1.94
MATR3-223	ENST00000514402	SIGLEC15	Q6ZMC9	328 aa		2.92	□□□□□ -1.94
MATR3-223	ENST00000514402	LCA5	Q86VQ0	697 aa		2.92	□□□□□ -1.94
MATR3-223	ENST00000514402	ZNF619	Q8N2I2	560 aa		2.92	□□□□□ -1.94
MATR3-223	ENST00000514402	VN1R17P	Q8TDU5	208 aa		2.92	□□□□□ -1.94
MATR3-223	ENST00000514402	MRPL24	Q96A35	216 aa	Known RBP	2.92	□□□□□ -1.94
MATR3-223	ENST00000514402	SLCO4A1	Q96BD0	722 aa		2.92	□□□□□ -1.94
MATR3-223	ENST00000514402	PCED1B	Q96HM7	432 aa		2.92	□□□□□ -1.94
MATR3-223	ENST00000514402	CDKN2AIPNL	Q96HQ2	116 aa		2.92	□□□□□ -1.94
MATR3-223	ENST00000514402	ZNF559	Q9BR84	538 aa		2.92	□□□□□ -1.94
MATR3-223	ENST00000514402	ZNF446	Q9NWS9	450 aa		2.92	□□□□□ -1.94
MATR3-223	ENST00000514402	IMPAD1	Q9NX62	359 aa		2.92	□□□□□ -1.94
MATR3-223	ENST00000514402	EPS15L1	Q9UBC2	864 aa		2.92	□□□□□ -1.94
MATR3-223	ENST00000514402	TEKT2	Q9UIF3	430 aa		2.92	□□□□□ -1.94
MATR3-223	ENST00000514402	MOSPD1	Q9UJG1	213 aa		2.92	□□□□□ -1.94
MATR3-223	ENST00000514402	LEF1	Q9UJU2	399 aa	Predicted RBP	2.92	□□□□□ -1.94
MATR3-223	ENST00000514402	BLOC1S6	Q9UL45	172 aa		2.92	□□□□□ -1.94
MATR3-223	ENST00000514402	CLEC4E	Q9ULY5	219 aa		2.92	□□□□□ -1.94
MATR3-223	ENST00000514402	PLEKHA6	Q9Y2H5	1048 aa		2.92	□□□□□ -1.94
MATR3-223	ENST00000514402	TRIM64C	A6NLI5	447 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	CCT8L1P	A6NM43	557 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	DDX39A	O00148	427 aa	Known RBP	2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	CHUK	O15111	745 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	KERA	O60938	352 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	ATP9A	O75110	1047 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	PRAMEF12	O95522	483 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	GH1	P01241	217 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	KRT6A	P02538	564 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	KRT6B	P04259	564 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	GPX3	P22352	226 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	KRT6C	P48668	564 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	HLCS	P50747	726 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	YBEY	P58557	167 aa	Predicted RBP	2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	ACTN3	Q08043	901 aa	Predicted RBP	2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	PPP1R3A	Q16821	1122 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	C2orf83	Q53S99	150 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	PODNL1	Q6PEZ8	512 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	C2orf66	Q6UXQ4	117 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	UNC5D	Q6UXZ4	953 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	OR7G3	Q8NG95	312 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	OR4F5	Q8NH21	305 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	PRCC	Q92733	491 aa	Predicted RBP	2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	PNPLA2	Q96AD5	504 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	TMEM237	Q96Q45	408 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	CCT8L2	Q96SF2	557 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	FUT8	Q9BYC5	575 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	TBK1	Q9UHD2	729 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	OR1A2	Q9Y585	309 aa		2.91	□□□□□ -1.94
MATR3-223	ENST00000514402	FGD5	Q6ZNL6	1462 aa		2.9	□□□□□ -1.94
MATR3-223	ENST00000514402		A4D1N5	150 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	CCDC69	A6NI79	296 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	KIN	O60870	393 aa	Known RBP	2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	ANXA9	O76027	345 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	GLCE	O94923	617 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	CT45A8	P0DMV1	189 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	CT45A9	P0DMV2	189 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	PGAM2	P15259	253 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	GAP43	P17677	238 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	POLR2F	P61218	127 aa	Known RBP	2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	PRKCE	Q02156	737 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	PAX2	Q02962	417 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	LCP2	Q13094	533 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	KIAA0040	Q15053	153 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	MICA	Q29983	383 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	CT45A2	Q5DJT8	189 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	DDI2	Q5TDH0	399 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402		Q6ZRG5	221 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	TUSC5	Q8IXB3	177 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	AQP12A	Q8IXF9	295 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	C10orf53	Q8N6V4	93 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	CHDH	Q8NE62	594 aa	Predicted RBP	2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	FBXO25	Q8TCJ0	367 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	TAF4B	Q92750	862 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	GGH	Q92820	318 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	CCDC114	Q96M63	670 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	GUCD1	Q96NT3	240 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	TSGA13	Q96PP4	275 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	ST6GALNAC5	Q9BVH7	336 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	AKAP7	Q9P0M2	348 aa	Predicted RBP	2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	EIF3K	Q9UBQ5	218 aa	Known RBP	2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	SEC14L4	Q9UDX3	406 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	ARMCX3	Q9UH62	379 aa	Predicted RBP	2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	MTF2	Q9Y483	593 aa	Predicted RBP	2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	ATG4B	Q9Y4P1	393 aa		2.9	□□□□□ -1.95
MATR3-223	ENST00000514402	TSPAN2	O60636	221 aa		2.89	□□□□□ -1.95
MATR3-223	ENST00000514402	LYPD3	O95274	346 aa		2.89	□□□□□ -1.95
MATR3-223	ENST00000514402	GUCA1C	O95843	209 aa		2.89	□□□□□ -1.95
MATR3-223	ENST00000514402	SLC16A8	O95907	504 aa		2.89	□□□□□ -1.95
MATR3-223	ENST00000514402	EPO	P01588	193 aa		2.89	□□□□□ -1.95
MATR3-223	ENST00000514402	IGHG3	P01860	377 aa		2.89	□□□□□ -1.95
MATR3-223	ENST00000514402		P0C879	139 aa		2.89	□□□□□ -1.95
MATR3-223	ENST00000514402	GDF1	P27539	372 aa		2.89	□□□□□ -1.95
MATR3-223	ENST00000514402	PRKAR2B	P31323	418 aa		2.89	□□□□□ -1.95
MATR3-223	ENST00000514402	MAGEA9	P43362	315 aa		2.89	□□□□□ -1.95
MATR3-223	ENST00000514402	CXCL6	P80162	114 aa		2.89	□□□□□ -1.95

Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms