RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 C1QTNF6Q9BXI9 259 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 RBFOX1Q9NWB1 397 aaKnown RBP9.17□□□□□ -0.94
VCAN-210ENST00000513960 FAM120CQ9NX05 1096 aaKnown RBP9.17□□□□□ -0.94
VCAN-210ENST00000513960 TRPC4Q9UBN4 977 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 ANGPT4Q9Y264 503 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 MAN2B2Q9Y2E5 1009 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 PRR23AA6NEV1 266 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 EEF1E1O43324 174 aaKnown RBP9.17□□□□□ -0.94
VCAN-210ENST00000513960 ADRA2AP08913 450 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 HLA-FP30511 346 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 SPINT3P49223 89 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 C19orf57Q0VDD7 668 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 GALEQ14376 348 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 TRIM40Q6P9F5 258 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 CREB3L2Q70SY1 520 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 TMPRSS11BQ86T26 416 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 ATCAYQ86WG3 371 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 PIAS4Q8N2W9 510 aaPredicted RBP9.17□□□□□ -0.94
VCAN-210ENST00000513960 LMNTD1Q8N9Z9 388 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 TMEM145Q8NBT3 493 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 DNAJA4Q8WW22 397 aaPredicted RBP9.17□□□□□ -0.94
VCAN-210ENST00000513960 GEMIN6Q8WXD5 167 aaKnown RBP9.17□□□□□ -0.94
VCAN-210ENST00000513960 UFD1Q92890 307 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 ZBED6CLQ96FA7 236 aaPredicted RBP9.17□□□□□ -0.94
VCAN-210ENST00000513960 TBX5Q99593 518 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 RNF208Q9H0X6 261 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 NUDT15Q9NV35 164 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 ADAM30Q9UKF2 790 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 MAFFQ9ULX9 164 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 TRAPPC4Q9Y296 219 aa9.17□□□□□ -0.94
VCAN-210ENST00000513960 TRBV4-1A0A0J9YWV2 114 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 OR2AG2A6NM03 316 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 GABRR3A8MPY1 467 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 ZNF197O14709 1029 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 TGM5O43548 720 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 NME6O75414 186 aaPredicted RBP9.16□□□□□ -0.94
VCAN-210ENST00000513960 BCHEP06276 602 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 PCSK2P16519 638 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 PRMT2P55345 433 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 B4GALNT1Q00973 533 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 MC1RQ01726 317 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 KIAA1161Q6NSJ0 714 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 Q6ZVU0 165 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 RDH10Q8IZV5 341 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 C2orf73Q8N5S3 287 aaPredicted RBP9.16□□□□□ -0.94
VCAN-210ENST00000513960 ASB11Q8WXH4 323 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 CIDECQ96AQ7 238 aaPredicted RBP9.16□□□□□ -0.94
VCAN-210ENST00000513960 UPRTQ96BW1 309 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 PPCDCQ96CD2 204 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 LRR1Q96L50 414 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 HCN2Q9UL51 889 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 RUVBL1Q9Y265 456 aaKnown RBP9.16□□□□□ -0.94
VCAN-210ENST00000513960 HS3ST2Q9Y278 367 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 NEDD8-MDP1E9PL57 170 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 C8AP07357 584 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 GPX2P18283 190 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 STOMP27105 288 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 AP1S2P56377 157 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 VSX2P58304 361 aaPredicted RBP9.16□□□□□ -0.94
VCAN-210ENST00000513960 RBBP4Q09028 425 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 MZT2AQ6P582 158 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 OR4M1Q8NGD0 313 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.16□□□□□ -0.94
VCAN-210ENST00000513960 ASZ1Q8WWH4 475 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 REPS1Q96D71 796 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 CPEB1Q9BZB8 566 aaKnown RBP9.16□□□□□ -0.94
VCAN-210ENST00000513960 TANC1Q9C0D5 1861 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 MIXL1Q9H2W2 232 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 NIPAL2Q9H841 368 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 ENAMQ9NRM1 1142 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 KLHL21Q9UJP4 597 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 CORO2BQ9UQ03 480 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 ANAPC1Q9H1A4 1944 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 A0A1W2PRG6 482 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 HYKKA2RU49 373 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 POM121CA8CG34 1229 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 MPC1LP0DKB6 136 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 PPIBP23284 216 aaKnown RBP9.16□□□□□ -0.94
VCAN-210ENST00000513960 PPM1AP35813 382 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 GGTA1PQ4G0N0 100 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 PLEKHS1Q5SXH7 462 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 ANXA8L1Q5VT79 327 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 GDPD4Q6W3E5 623 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 ANKK1Q8NFD2 765 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 CREB3L4Q8TEY5 395 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 ZNF296Q8WUU4 475 aaPredicted RBP9.16□□□□□ -0.94
VCAN-210ENST00000513960 TESCQ96BS2 214 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 ECHDC3Q96DC8 303 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 NUP50Q9UKX7 468 aa9.16□□□□□ -0.94
VCAN-210ENST00000513960 CHURC1-FNTBB4DL54 471 aa9.15□□□□□ -0.94
VCAN-210ENST00000513960 TGFB1P01137 390 aa9.15□□□□□ -0.94
VCAN-210ENST00000513960 HBQ1P09105 142 aa9.15□□□□□ -0.94
VCAN-210ENST00000513960 C1SP09871 688 aa9.15□□□□□ -0.94
VCAN-210ENST00000513960 IL1RNP18510 177 aa9.15□□□□□ -0.94
VCAN-210ENST00000513960 PRKAG1P54619 331 aa9.15□□□□□ -0.94
VCAN-210ENST00000513960 SP140Q13342 867 aa9.15□□□□□ -0.94
VCAN-210ENST00000513960 VEZF1Q14119 521 aa9.15□□□□□ -0.94
VCAN-210ENST00000513960 SLC39A5Q6ZMH5 540 aa9.15□□□□□ -0.94
VCAN-210ENST00000513960 VRK3Q8IV63 474 aa9.15□□□□□ -0.94
VCAN-210ENST00000513960 CHST14Q8NCH0 376 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms