RNA–Protein interactions for RNA: ENST00000511439.5

TOPBP1-208, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 5

Gene TOPBP1, Length 1,142 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-208ENST00000511439 DHX58Q96C10 678 aa3.18□□□□□ -1.9
TOPBP1-208ENST00000511439 SNRNP40Q96DI7 357 aaKnown RBP3.18□□□□□ -1.9
TOPBP1-208ENST00000511439 C19orf60Q96EN9 201 aa3.18□□□□□ -1.9
TOPBP1-208ENST00000511439 SERAC1Q96JX3 654 aa3.18□□□□□ -1.9
TOPBP1-208ENST00000511439 RANBP9Q96S59 729 aa3.18□□□□□ -1.9
TOPBP1-208ENST00000511439 NAA11Q9BSU3 229 aaPredicted RBP3.18□□□□□ -1.9
TOPBP1-208ENST00000511439 TRAF4Q9BUZ4 470 aaPredicted RBP3.18□□□□□ -1.9
TOPBP1-208ENST00000511439 API5Q9BZZ5 524 aaKnown RBP3.18□□□□□ -1.9
TOPBP1-208ENST00000511439 Q9N2K0 584 aa3.18□□□□□ -1.9
TOPBP1-208ENST00000511439 MYNNQ9NPC7 610 aa3.18□□□□□ -1.9
TOPBP1-208ENST00000511439 ASF1BQ9NVP2 202 aa3.18□□□□□ -1.9
TOPBP1-208ENST00000511439 ZNF624Q9P2J8 865 aaPredicted RBP3.18□□□□□ -1.9
TOPBP1-208ENST00000511439 TCF19Q9Y242 345 aa3.18□□□□□ -1.9
TOPBP1-208ENST00000511439 U3KQA8 63 aa3.18□□□□□ -1.9
TOPBP1-208ENST00000511439 VPS13CQ709C8 3753 aa3.18□□□□□ -1.9
TOPBP1-208ENST00000511439 PRRC2AP48634 2157 aaKnown RBP3.18□□□□□ -1.9
TOPBP1-208ENST00000511439 ZSCAN5CA6NGD5 496 aaPredicted RBP3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 FAM47DPA6NHR8 397 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 DUXAA6NLW8 204 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 PMS2P5A8MQ11 134 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 SMIM1B2RUZ4 78 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 D6RAR5 112 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 CIDEAO60543 219 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 RPN1P04843 607 aaKnown RBP3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 QDPRP09417 244 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 SMIM18P0DKX4 95 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 PCP11498 1178 aaKnown RBP3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 ERCC2P18074 760 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 ARF4P18085 180 aaPredicted RBP3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 UGT1A3P35503 534 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 CDKN1AP38936 164 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 VEGFCP49767 419 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 ASCL1P50553 236 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 CDH11P55287 796 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 CX3CL1P78423 397 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 MAT1AQ00266 395 aaKnown RBP3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 ACSM1Q08AH1 577 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 CAMK2DQ13557 499 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 E2F5Q15329 346 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 SYT14P1Q58G82 188 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 KRBOX4Q5JUW0 171 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 GLRA4Q5JXX5 417 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 MFSD12Q6NUT3 480 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 CEACAM20Q6UY09 585 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 DET1Q7L5Y6 550 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 SLFN11Q7Z7L1 901 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 IQCA1Q86XH1 822 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 HPS6Q86YV9 775 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 RNF149Q8NC42 400 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 NPEPL1Q8NDH3 523 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 TRIM58Q8NG06 486 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 OR10V1Q8NGI7 309 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 OR1J1Q8NGS3 322 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 SSMEM1Q8WWF3 244 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 SENP5Q96HI0 755 aaPredicted RBP3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 CYP2S1Q96SQ9 504 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 FEVQ99581 238 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 RHNO1Q9BSD3 238 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 SLC25A23Q9BV35 468 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 EDEM3Q9BZQ6 932 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 TRIM9Q9C026 710 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 DNAJC17Q9NVM6 304 aaKnown RBP3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 ADPRHL2Q9NX46 363 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 AKAP7Q9P0M2 348 aaPredicted RBP3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 ABCA4P78363 2273 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 HIVEP2P31629 2446 aa3.17□□□□□ -1.9
TOPBP1-208ENST00000511439 PRRC2CQ9Y520 2896 aaKnown RBP3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 IGLV9-49A0A0B4J1Y8 123 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 A0A1B0GUA9 196 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 A0A1W2PN81 502 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 WASH3PC4AMC7 463 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 INPP4BO15327 924 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 RAD1O60671 282 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 RECQL5O94762 991 aaPredicted RBP3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 PIGNO95427 931 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 ATP5BP06576 529 aaKnown RBP3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 FRMD6-AS1P0C7T7 363 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 GIMD1P0DJR0 217 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 ERVK-10P10266 1014 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 HMGA1P17096 107 aaKnown RBP3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 CHRNA7P36544 502 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 ETV5P41161 510 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 GLIPR1P48060 266 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 NT5C2P49902 561 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 POLR2LP62875 67 aaKnown RBP3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 DEFA6Q01524 100 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 DMPKQ09013 629 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 LAMTOR4Q0VGL1 99 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 TFDP1Q14186 410 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 HYAL4Q2M3T9 481 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 XKR3Q5GH77 459 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 DCAF10Q5QP82 559 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 ATP1A1-AS1Q5TC04 95 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 ARMCX5Q6P1M9 558 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 ZBTB49Q6ZSB9 765 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 NIPA1Q7RTP0 329 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 CDR2LQ86X02 465 aaPredicted RBP3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 NUDT13Q86X67 352 aa3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 APLFQ8IW19 511 aaPredicted RBP3.16□□□□□ -1.9
TOPBP1-208ENST00000511439 MFN1Q8IWA4 741 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms