RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 ADH6P28332 368 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 CHI3L1P36222 383 aaPredicted RBP6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 EVX1P49640 407 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 RPS14P62263 151 aaKnown RBP6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 LRRC37A5PQ49AS3 106 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 MRNIPQ6NTE8 343 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 CDPF1Q6NVV7 123 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 XRRA1Q6P2D8 792 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 HAGHLQ6PII5 290 aaPredicted RBP6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 FBXO16Q8IX29 292 aaPredicted RBP6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 OXR1Q8N573 874 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 OR4F15Q8NGB8 312 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 SELENOMQ8WWX9 145 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 CDKN2AIPNLQ96HQ2 116 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 SLC6A18Q96N87 628 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 C7orf50Q9BRJ6 194 aaKnown RBP6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 SPON2Q9BUD6 331 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 BOCQ9BWV1 1114 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 TFB2MQ9H5Q4 396 aaKnown RBP6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 SLC39A1Q9NY26 324 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 ZNF69Q9UC07 566 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 FKBPLQ9UIM3 349 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 AUP1Q9Y679 476 aa6.9□□□□□ -1.3
LIMCH1-207ENST00000508466 ZC3H12DA2A288 527 aaKnown RBP6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 STMND1H3BQB6 276 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 TLR4O00206 839 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 QSOX1O00391 747 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 MATN3O15232 486 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 MAGEB4O15481 346 aaPredicted RBP6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 PSMD3O43242 534 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 PRKYO43930 277 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 CACNG3O60359 315 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 ADAM11O75078 769 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 OAZ2O95190 189 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 CELF2O95319 508 aaKnown RBP6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 ANXA7P20073 488 aaKnown RBP6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 ADH7P40394 386 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 STK19P49842 368 aaPredicted RBP6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 RAB13P51153 203 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 IL2P60568 153 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 FAM187BQ17R55 369 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 RPS26P11Q5JNZ5 115 aaPredicted RBP6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 TMEM255AQ5JRV8 349 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 MARC1Q5VT66 337 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 KIAA1161Q6NSJ0 714 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 LRRN1Q6UXK5 716 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 MIB1Q86YT6 1006 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 FAM219AQ8IW50 185 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 OR4D9Q8NGE8 314 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 NEIL3Q8TAT5 605 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 TRMT10AQ8TBZ6 339 aaKnown RBP6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 INTS12Q96CB8 462 aaKnown RBP6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 ARSGQ96EG1 525 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 MRPL48Q96GC5 212 aaKnown RBP6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 TNIP3Q96KP6 325 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 SPATA33Q96N06 139 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 SLC38A2Q96QD8 506 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 ATF6BQ99941 703 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 GSDMCQ9BYG8 508 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 ZNF436Q9C0F3 470 aaPredicted RBP6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 ATG10Q9H0Y0 220 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 HEBP1Q9NRV9 189 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 WSB2Q9NYS7 404 aaPredicted RBP6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 WWOXQ9NZC7 414 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 SEC14L4Q9UDX3 406 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 SSUH2Q9Y2M2 353 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 FKBP7Q9Y680 259 aa6.9□□□□□ -1.31
LIMCH1-207ENST00000508466 TRABD2BA6NFA1 517 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 G3V3Q6 166 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 NME6O75414 186 aaPredicted RBP6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 GCM2O75603 506 aaPredicted RBP6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 CRYBA1P05813 215 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 HIST1H2AGP0C0S8 130 aaPredicted RBP6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 EBLN1P0CF75 366 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 COX7A2P14406 83 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 PVALBP20472 110 aaPredicted RBP6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 NPR2P20594 1047 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 HIST1H2ADP20671 130 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 BTCP35070 178 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 PTGFRP43088 359 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 RAD52P43351 418 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 MAGEA2P43356 314 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 MAPKAPK2P49137 400 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 HOXA1P49639 335 aaPredicted RBP6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 RAB33AQ14088 237 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 SF3A2Q15428 464 aaKnown RBP6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 NHLRC3Q5JS37 347 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 HIST2H2AA3Q6FI13 130 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 PYHIN1Q6K0P9 492 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 ZER1Q7Z7L7 766 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 UNC93AQ86WB7 457 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 CALHM3Q86XJ0 350 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 BVESQ8NE79 360 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 NFKBIDQ8NI38 313 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 NSMAFQ92636 917 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 FOXJ1Q92949 421 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 MARVELD3Q96A59 401 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 EXOSC8Q96B26 276 aaKnown RBP6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 HIST1H2AHQ96KK5 128 aa6.89□□□□□ -1.31
LIMCH1-207ENST00000508466 LRR1Q96L50 414 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms