RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 A0A1B0GX78 115 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 TCRBV9S1A1TA0A576 114 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 CTAGE15A4D2H0 777 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 NCF1BA6NI72 391 aaPredicted RBP4.28□□□□□ -1.72
NUP54-206ENST00000508465 FAM159BA6NKW6 160 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 NCF1CA8MVU1 366 aaPredicted RBP4.28□□□□□ -1.72
NUP54-206ENST00000508465 MKRN2OSH3BPM6 223 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 SGK494L7N484 410 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 DSCR3O14972 297 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 PHGDHO43175 533 aaKnown RBP4.28□□□□□ -1.72
NUP54-206ENST00000508465 OR1F1O43749 312 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 SRPX2O60687 465 aaPredicted RBP4.28□□□□□ -1.72
NUP54-206ENST00000508465 JRKO75564 520 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 SERPIND1P05546 499 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 C8GP07360 202 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 HIST1H2AGP0C0S8 130 aaPredicted RBP4.28□□□□□ -1.72
NUP54-206ENST00000508465 CCDC166P0CW27 439 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 SFTPCP11686 197 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 NCF1P14598 390 aaPredicted RBP4.28□□□□□ -1.72
NUP54-206ENST00000508465 HIST1H2ADP20671 130 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 HNF4AP41235 474 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 PMS2P54278 862 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 ARSFP54793 590 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 SLC12A2P55011 1212 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 CSNK1G2P78368 415 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 MAT1AQ00266 395 aaKnown RBP4.28□□□□□ -1.72
NUP54-206ENST00000508465 FRG1Q14331 258 aaKnown RBP4.28□□□□□ -1.72
NUP54-206ENST00000508465 OR4D1Q15615 310 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 TSNQ15631 228 aaKnown RBP4.28□□□□□ -1.72
NUP54-206ENST00000508465 UAP1Q16222 522 aaPredicted RBP4.28□□□□□ -1.72
NUP54-206ENST00000508465 KBTBD12Q3ZCT8 623 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 MINDY4Q4G0A6 757 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 LACTB2Q53H82 288 aaPredicted RBP4.28□□□□□ -1.72
NUP54-206ENST00000508465 VWA2Q5GFL6 755 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 TCTE1Q5JU00 501 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 C10orf62Q5T681 223 aaPredicted RBP4.28□□□□□ -1.72
NUP54-206ENST00000508465 FAM45BPQ6NSW5 357 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 SLC2A7Q6PXP3 512 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 SBSNQ6UWP8 590 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 COX15Q7KZN9 410 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 PRSS41Q7RTY9 318 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 PPP1R32Q7Z5V6 425 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 CTAGE6Q86UF2 777 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 SLC26A11Q86WA9 606 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 C17orf64Q86WR6 236 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 KRT73Q86Y46 540 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 TTC29Q8NA56 475 aaPredicted RBP4.28□□□□□ -1.72
NUP54-206ENST00000508465 FDCSPQ8NFU4 85 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 OR9A4Q8NGU2 314 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 OR2Y1Q8NGV0 311 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 SVIPQ8NHG7 77 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 FAM45AQ8TCE6 357 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 THAP4Q8WY91 577 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 RERGQ96A58 199 aaPredicted RBP4.28□□□□□ -1.72
NUP54-206ENST00000508465 ESAMQ96AP7 390 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 FKBP10Q96AY3 582 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 PTERQ96BW5 349 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 C8orf44Q96CB5 159 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 MOCOSQ96EN8 888 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 MMABQ96EY8 250 aaPredicted RBP4.28□□□□□ -1.72
NUP54-206ENST00000508465 PDLIM5Q96HC4 596 aaKnown RBP4.28□□□□□ -1.72
NUP54-206ENST00000508465 VPS39Q96JC1 886 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 C10orf90Q96M02 699 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 LRGUKQ96M69 825 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 ZNF285Q96NJ3 590 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 OR2A5Q96R48 311 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 H2AFJQ9BTM1 129 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 SLC25A23Q9BV35 468 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 TRIM54Q9BYV2 358 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 ZNF700Q9H0M5 742 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 RAB17Q9H0T7 212 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 RHOJQ9H4E5 214 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 ZBTB20Q9HC78 741 aaPredicted RBP4.28□□□□□ -1.72
NUP54-206ENST00000508465 ZNF304Q9HCX3 659 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 CCDC177Q9NQR7 707 aaPredicted RBP4.28□□□□□ -1.72
NUP54-206ENST00000508465 ZDHHC18Q9NUE0 388 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 TMEM184CQ9NVA4 438 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 P4HTMQ9NXG6 502 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 TXNDC16Q9P2K2 825 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 TRPC4Q9UBN4 977 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 CTNNAL1Q9UBT7 734 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 FBXL4Q9UKA2 621 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 KLK4Q9Y5K2 254 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 HEMK1Q9Y5R4 338 aaPredicted RBP4.28□□□□□ -1.72
NUP54-206ENST00000508465 MRFAP1Q9Y605 127 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 MED13Q9UHV7 2174 aa4.28□□□□□ -1.72
NUP54-206ENST00000508465 CCDC189A1A4V9 331 aa4.27□□□□□ -1.73
NUP54-206ENST00000508465 PABPN1LA6NDY0 278 aaKnown RBP4.27□□□□□ -1.73
NUP54-206ENST00000508465 ZNF860A6NHJ4 632 aa4.27□□□□□ -1.73
NUP54-206ENST00000508465 FAM227AF5H4B4 570 aa4.27□□□□□ -1.73
NUP54-206ENST00000508465 J3QKU1 62 aa4.27□□□□□ -1.73
NUP54-206ENST00000508465 EIF3FO00303 357 aaPredicted RBP4.27□□□□□ -1.73
NUP54-206ENST00000508465 PEX12O00623 359 aa4.27□□□□□ -1.73
NUP54-206ENST00000508465 EIF3HO15372 352 aaKnown RBP eCLIP4.27□□□□□ -1.73
NUP54-206ENST00000508465 SLC16A5O15375 505 aa4.27□□□□□ -1.73
NUP54-206ENST00000508465 TAPBPO15533 448 aa4.27□□□□□ -1.73
NUP54-206ENST00000508465 SLC43A1O75387 559 aa4.27□□□□□ -1.73
NUP54-206ENST00000508465 NXPH3O95157 252 aa4.27□□□□□ -1.73
NUP54-206ENST00000508465 CCNDBP1O95273 360 aa4.27□□□□□ -1.73
NUP54-206ENST00000508465 ACSL3O95573 720 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms