RNA–Protein interactions for RNA: ENST00000508037.1

HMGB3P16-201, Transcript of high mobility group box 3 pseudogene 16, humanhuman

BASIC

Gene HMGB3P16, Length 287 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P16-201ENST00000508037 SCN10AQ9Y5Y9 1956 aa4.72□□□□□ -1.65
HMGB3P16-201ENST00000508037 ZNF106Q9H2Y7 1883 aaKnown RBP4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 PRAMEF33A0A0G2JMD5 474 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 A0A0U1RQS6 177 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 A0A1W2PQ72 361 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 A0A1W2PRQ8 180 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 CARNS1A5YM72 827 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 NPIPB15A6NHN6 443 aaPredicted RBP4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 MANSC4A6NHS7 340 aaPredicted RBP4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 C12orf71A8MTZ7 269 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 A8MV72 311 aaPredicted RBP4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 E7EQ34 232 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 AP3D1O14617 1153 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 SHOXO15266 292 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 SEPT4O43236 478 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 PRODHO43272 600 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 LYRM1O43325 122 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 AKAP8O43823 692 aaKnown RBP4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 SSX4O60224 188 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 ICMTO60725 284 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 PRAMEF10O60809 474 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 NME6O75414 186 aaPredicted RBP4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 ITGA10O75578 1167 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 GCM2O75603 506 aaPredicted RBP4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 RFPL3O75679 317 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 VNN2O95498 520 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 POP4O95707 220 aaKnown RBP4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 B3GALT4O96024 378 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 FURINP09958 794 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 ACP2P11117 423 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 PSKH1P11801 424 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 CYBAP13498 195 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 POU2F1P14859 743 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 HOXD10P28358 340 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 PPP2R1BP30154 601 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 ADH7P40394 386 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 SPINT3P49223 89 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 SGSHP51688 502 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 ACLYP53396 1101 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 MVDP53602 400 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 RPS13P62277 151 aaKnown RBP4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 RACK1P63244 317 aaKnown RBP4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 HBA1P69905 142 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 RAE1P78406 368 aaKnown RBP4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 SMAD3P84022 425 aaKnown RBP4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 B4GALNT1Q00973 533 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 SEMG2Q02383 582 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 C2orf80Q0P641 193 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 SLAMF1Q13291 335 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 PLD1Q13393 1074 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 IKZF1Q13422 519 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 CCINQ13939 588 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 IL18Q14116 193 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 GANABQ14697 944 aaKnown RBP4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 SEC23BQ15437 767 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 TAF1CQ15572 869 aaPredicted RBP4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 COL28A1Q2UY09 1125 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 BTBD16Q32M84 506 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 SPDYE7PQ495Y7 208 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 MINDY4Q4G0A6 757 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 ATP13A5Q4VNC0 1218 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 KLHL12Q53G59 568 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 FAM209AQ5JX71 171 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 COX20Q5RI15 118 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 LIPKQ5VXJ0 399 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 SAXO2Q658L1 398 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 C22orf42Q6IC83 251 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 FAM71E1Q6IPT2 247 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 BRAT1Q6PJG6 821 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 COMMD6Q7Z4G1 85 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 DEFB132Q7Z7B7 95 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 FAM217AQ8IXS0 508 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 LAS2Q8IYD9 372 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 GPR65Q8IYL9 337 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 KRT78Q8N1N4 520 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 GHDCQ8N2G8 530 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 Q8N402 240 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 CPXM2Q8N436 756 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 TRAM1L1Q8N609 369 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 HUS1BQ8NHY5 278 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 VANGL1Q8TAA9 524 aaPredicted RBP4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 HCAR2Q8TDS4 363 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 C16orf78Q8WTQ4 265 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 SETD7Q8WTS6 366 aaKnown RBP4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 SMG7Q92540 1137 aaKnown RBP4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 SNAPC3Q92966 411 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 ECHDC3Q96DC8 303 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 NEURL3Q96EH8 262 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 C1GALT1C1Q96EU7 318 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 ALG14Q96F25 216 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 OTUB1Q96FW1 271 aaPredicted RBP4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 MED8Q96G25 268 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 PDXPQ96GD0 296 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 ZNF764Q96H86 408 aaPredicted RBP4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 B3GALT6Q96L58 329 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 ZNF354BQ96LW1 612 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 CAMK1GQ96NX5 476 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 MARVELD1Q9BSK0 173 aa4.71□□□□□ -1.66
HMGB3P16-201ENST00000508037 ZSCAN5AQ9BUG6 496 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms