RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	NUDT9	Q9BW91	350 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	SPATA16	Q9BXB7	569 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	PITPNM3	Q9BZ71	974 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	MAGEE1	Q9HCI5	957 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	MRPL47	Q9HD33	250 aa	Known RBP	4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	FGF21	Q9NSA1	209 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	RBM22	Q9NW64	420 aa	Known RBP eCLIP	4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	GRHL1	Q9NZI5	618 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	CPSF2	Q9P2I0	782 aa	Known RBP	4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	COPG2	Q9UBF2	871 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	ADAM21	Q9UKJ8	722 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	POMT2	Q9UKY4	750 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	BTRC	Q9Y297	605 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	KRTAP9-6	A0A140TA67	174 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	HEATR9	A2RTY3	570 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	ARGFX	A6NJG6	315 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	USP17L23	D6RBM5	183 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	RRH	O14718	337 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	CLGN	O14967	610 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	KMO	O15229	486 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	HCRTR2	O43614	444 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	SCRG1	O75711	98 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	SLC25A14	O95258	325 aa	Predicted RBP	4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	MT-CYB	P00156	380 aa	Predicted RBP	4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	NPS	P0C0P6	89 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	ITGAM	P11215	1152 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	SKIL	P12757	684 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	CD1E	P15812	388 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	TNFRSF1A	P19438	455 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	POU1F1	P28069	291 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	HTR1E	P28566	365 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	TLX1	P31314	330 aa	Predicted RBP	4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	MSH2	P43246	934 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	CAPZA2	P47755	286 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	SOX2	P48431	317 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	KPNA2	P52292	529 aa	Known RBP	4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	ARSF	P54793	590 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	TUBB4B	P68371	445 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	SLC18A2	Q05940	514 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	WASHC5	Q12768	1159 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	ART3	Q13508	389 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	OLIG2	Q13516	323 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	TUBB2A	Q13885	445 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	NFE2L1	Q14494	772 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	NCF4	Q15080	339 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	CHRNA6	Q15825	494 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	TAZ	Q16635	292 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	ZNF630	Q2M218	657 aa	Predicted RBP	4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	ERCC6L	Q2NKX8	1250 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	BCL7A	Q4VC05	210 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	AWAT1	Q58HT5	328 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	KRBOX4	Q5JUW0	171 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	DNTTIP2	Q5QJE6	756 aa	Known RBP	4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	GPRC6A	Q5T6X5	926 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	PRAMEF17	Q5VTA0	474 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	HIST2H2BD	Q6DRA6	164 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	IRGC	Q6NXR0	463 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	ANKRD16	Q6P6B7	361 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	FAM199X	Q6PEV8	388 aa	Predicted RBP	4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	MYO7B	Q6PIF6	2116 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	FAM151B	Q6UXP7	276 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	FJX1	Q86VR8	437 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	KMT5C	Q86Y97	462 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	C1QL4	Q86Z23	238 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	TRAPPC5	Q8IUR0	188 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	DSEL	Q8IZU8	1212 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	AMER2	Q8N7J2	671 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	RASGEF1A	Q8N9B8	481 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	SIDT2	Q8NBJ9	832 aa	Known RBP	4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	ANKRD20A12P	Q8NF67	263 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	FDCSP	Q8NFU4	85 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	SPATA22	Q8NHS9	363 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	DTX3L	Q8TDB6	740 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	NAT14	Q8WUY8	206 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	TMEM170A	Q8WVE7	144 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	SYN2	Q92777	582 aa	Predicted RBP	4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	OXNAD1	Q96HP4	312 aa	Predicted RBP	4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	HS6ST2	Q96MM7	605 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	DGAT2	Q96PD7	388 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	FCRL4	Q96PJ5	515 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	RNF157	Q96PX1	679 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	FRG2B	Q96QU4	278 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	ADO	Q96SZ5	270 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	NRTN	Q99748	197 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	MAP3K3	Q99759	626 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	KRTAP4-12	Q9BQ66	201 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	H2AFJ	Q9BTM1	129 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	SLC25A23	Q9BV35	468 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	MLPH	Q9BV36	600 aa	Predicted RBP	4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	TUBB2B	Q9BVA1	445 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	C1QTNF5	Q9BXJ0	243 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	SLC29A3	Q9BZD2	475 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	FAM129A	Q9BZQ8	928 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	ING2	Q9H160	280 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	PLK3	Q9H4B4	646 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	KIR3DX1	Q9H7L2	352 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	ZNF703	Q9H7S9	590 aa	Predicted RBP	4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	IL26	Q9NPH9	171 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	SLC24A2	Q9UI40	661 aa		4.02	□□□□□ -1.77
VPS52-222	ENST00000495981	RARRES3	Q9UL19	164 aa		4.02	□□□□□ -1.77

Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms