RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 CDC25BP30305 580 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 GALNSP34059 522 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 CASP2P42575 452 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 MSH2P43246 934 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 RPL21P46778 160 aaKnown RBP7.48□□□□□ -1.21
USP39-216ENST00000490193 AGFG1P52594 562 aaKnown RBP7.48□□□□□ -1.21
USP39-216ENST00000490193 LAPTM5Q13571 262 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 DOC2AQ14183 400 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 RCAN2Q14206 197 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 POU4F3Q15319 338 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 TBCCQ15814 346 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 DCST1Q5T197 706 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 STEAP4Q687X5 459 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 RNF111Q6ZNA4 994 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 FRA10AC1Q70Z53 315 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 ZC3HC1Q86WB0 502 aaKnown RBP7.48□□□□□ -1.21
USP39-216ENST00000490193 IGDCC3Q8IVU1 814 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 TAGAPQ8N103 731 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 C9orf106Q8NAJ2 232 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 SPPL2AQ8TCT8 520 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 ZNF473Q8WTR7 871 aaKnown RBP7.48□□□□□ -1.21
USP39-216ENST00000490193 ANKRD49Q8WVL7 239 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 DIO2Q92813 273 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 TANKQ92844 425 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 TP53INP1Q96A56 240 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 RBM18Q96H35 190 aaKnown RBP7.48□□□□□ -1.21
USP39-216ENST00000490193 TMEM41AQ96HV5 264 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 VPS39Q96JC1 886 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 Q96MF0 132 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 JSRP1Q96MG2 331 aaPredicted RBP7.48□□□□□ -1.21
USP39-216ENST00000490193 RILPQ96NA2 401 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 RPF2Q9H7B2 306 aaKnown RBP7.48□□□□□ -1.21
USP39-216ENST00000490193 CNOT10Q9H9A5 744 aaKnown RBP7.48□□□□□ -1.21
USP39-216ENST00000490193 POPDC3Q9HBV1 291 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 CTNNAL1Q9UBT7 734 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 CAMK2AQ9UQM7 478 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 EIF3LQ9Y262 564 aaKnown RBP7.48□□□□□ -1.21
USP39-216ENST00000490193 TESMINQ9Y4I5 508 aa7.48□□□□□ -1.21
USP39-216ENST00000490193 IQANK1A0A1B0GTG1 560 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 FAM95CA0A1B0GW59 222 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 A8MXE2 369 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 INAFM1C9JVW0 142 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 RTCAO00442 366 aaKnown RBP7.47□□□□□ -1.21
USP39-216ENST00000490193 DNALI1O14645 258 aaPredicted RBP7.47□□□□□ -1.21
USP39-216ENST00000490193 CASKO14936 926 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 CDH16O75309 829 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 BANF1O75531 89 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 TRAPPC6AO75865 159 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 LRATO95237 230 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 WISP3O95389 354 aaPredicted RBP7.47□□□□□ -1.21
USP39-216ENST00000490193 ACSL3O95573 720 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 IGHA1P01876 353 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 CLPSP04118 112 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 CYP4B1P13584 511 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 EPORP19235 508 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 FPR1P21462 350 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 PTPN6P29350 595 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 SERPINB1P30740 379 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 SOX18P35713 384 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 CASP3P42574 277 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 SSR2P43308 183 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 SLCO1A2P46721 670 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 FNTAP49354 379 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 TMED10P49755 219 aaKnown RBP7.47□□□□□ -1.21
USP39-216ENST00000490193 ARFIP1P53367 373 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 NAGLUP54802 743 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 TAS2R39P59534 338 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 HERVK_113P63132 956 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 ERVK-8P63133 956 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 EEF1A1P68104 462 aaKnown RBP7.47□□□□□ -1.21
USP39-216ENST00000490193 PPP2R2BQ00005 443 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 TNFRSF17Q02223 184 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 PCDH1Q08174 1060 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 FOXF2Q12947 444 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 ZNF460Q14592 562 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 PDK4Q16654 411 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 AP5B1Q2VPB7 878 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 PAGE2BQ5JRK9 111 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 EEF1A1P5Q5VTE0 462 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 TMEM81Q6P7N7 255 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 TRMT10BQ6PF06 316 aaKnown RBP7.47□□□□□ -1.21
USP39-216ENST00000490193 YTHDF3Q7Z739 585 aaKnown RBP7.47□□□□□ -1.21
USP39-216ENST00000490193 OR4N5Q8IXE1 308 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 LAS2Q8IYD9 372 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 ZCCHC7Q8N3Z6 543 aaKnown RBP7.47□□□□□ -1.21
USP39-216ENST00000490193 PDPRQ8NCN5 879 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 LRRN4CLQ8ND94 238 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 PPP1R14CQ8TAE6 165 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 GRK7Q8WTQ7 553 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 ABTB1Q969K4 478 aaPredicted RBP7.47□□□□□ -1.21
USP39-216ENST00000490193 PPWD1Q96BP3 646 aaKnown RBP7.47□□□□□ -1.21
USP39-216ENST00000490193 LRRC39Q96DD0 335 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 GNRHR2Q96P88 292 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 GAL3ST4Q96RP7 486 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 TM9SF2Q99805 663 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 MCMBPQ9BTE3 642 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 ERVK-6Q9BXR3 956 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 PHACTR1Q9C0D0 580 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 DERL2Q9GZP9 239 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 ACBD3Q9H3P7 528 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms