RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 MED25Q71SY5 747 aa20.31■□□□□ 0.84
SMC4-221ENST00000489573 C11orf65Q8NCR3 313 aa20.31■□□□□ 0.84
SMC4-221ENST00000489573 ADCY4Q8NFM4 1077 aa20.31■□□□□ 0.84
SMC4-221ENST00000489573 KAT2AQ92830 837 aa20.31■□□□□ 0.84
SMC4-221ENST00000489573 YIPF2Q9BWQ6 316 aa20.31■□□□□ 0.84
SMC4-221ENST00000489573 STX18Q9P2W9 335 aaKnown RBP20.31■□□□□ 0.84
SMC4-221ENST00000489573 VPS13AQ96RL7 3174 aa20.31■□□□□ 0.84
SMC4-221ENST00000489573 TCRBV5S2A0A599 114 aa20.3■□□□□ 0.84
SMC4-221ENST00000489573 H3BNX3 289 aa20.3■□□□□ 0.84
SMC4-221ENST00000489573 PLOD2O00469 737 aa20.3■□□□□ 0.84
SMC4-221ENST00000489573 FOXD2O60548 495 aaPredicted RBP20.3■□□□□ 0.84
SMC4-221ENST00000489573 SLITRK5O94991 958 aa20.3■□□□□ 0.84
SMC4-221ENST00000489573 TIAF1O95411 115 aa20.3■□□□□ 0.84
SMC4-221ENST00000489573 SLC35E2P0CK97 266 aa20.3■□□□□ 0.84
SMC4-221ENST00000489573 FGF5P12034 268 aa20.3■□□□□ 0.84
SMC4-221ENST00000489573 IL10P22301 178 aa20.3■□□□□ 0.84
SMC4-221ENST00000489573 MAGEA8P43361 318 aa20.3■□□□□ 0.84
SMC4-221ENST00000489573 PRIM2P49643 509 aa20.3■□□□□ 0.84
SMC4-221ENST00000489573 DSTNP60981 165 aa20.3■□□□□ 0.84
SMC4-221ENST00000489573 RPS26P62854 115 aaKnown RBP20.3■□□□□ 0.84
SMC4-221ENST00000489573 IGLV3-21P80748 117 aaPredicted RBP20.3■□□□□ 0.84
SMC4-221ENST00000489573 RBBP4Q09028 425 aa20.3■□□□□ 0.84
SMC4-221ENST00000489573 STX4Q12846 297 aa20.3■□□□□ 0.84
SMC4-221ENST00000489573 IL11RAQ14626 422 aa20.3■□□□□ 0.84
SMC4-221ENST00000489573 CCDC157Q569K6 752 aa20.3■□□□□ 0.84
SMC4-221ENST00000489573 ZNF628Q5EBL2 1059 aa20.3■□□□□ 0.84
SMC4-221ENST00000489573 PWWP2BQ6NUJ5 590 aa20.3■□□□□ 0.84
SMC4-221ENST00000489573 BMPERQ8N8U9 685 aa20.3■□□□□ 0.84
SMC4-221ENST00000489573 FAM162AQ96A26 154 aa20.3■□□□□ 0.84
SMC4-221ENST00000489573 DUS3LQ96G46 650 aaKnown RBP20.3■□□□□ 0.84
SMC4-221ENST00000489573 TMEM38AQ9H6F2 299 aa20.3■□□□□ 0.84
SMC4-221ENST00000489573 TRPC4Q9UBN4 977 aa20.3■□□□□ 0.84
SMC4-221ENST00000489573 ASCC3Q8N3C0 2202 aaKnown RBP20.3■□□□□ 0.84
SMC4-221ENST00000489573 MYOCOSA0A1B0GUC4 107 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 CREG1O75629 220 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 HBQ1P09105 142 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 IFI6P09912 130 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 ATXN8OSP0DMR3 200 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 NT5EP21589 574 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 PRKAG1P54619 331 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 VEZF1Q14119 521 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 CEACAM20Q6UY09 585 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 HORMAD2Q8N7B1 307 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 OR7G2Q8NG99 324 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 OR52E4Q8NGH9 312 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 ZNF675Q8TD23 568 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 MAL2Q969L2 176 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 APMAPQ9HDC9 416 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 LANCL2Q9NS86 450 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 DDX18Q9NVP1 670 aaKnown RBP20.29■□□□□ 0.84
SMC4-221ENST00000489573 NTMQ9P121 344 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 PTGFRNQ9P2B2 879 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 ANGPTL2Q9UKU9 493 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 DHRS12A0PJE2 317 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 TGFBR3LH3BV60 316 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 OR10H2O60403 315 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 JRKO75564 520 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 BMP10O95393 424 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 GPIP06744 558 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 ANPEPP15144 967 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 SLC7A1P30825 629 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 KHKP50053 298 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 BTG2P78543 158 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 MRPS35P82673 323 aaKnown RBP20.29■□□□□ 0.84
SMC4-221ENST00000489573 TNFAIP8L2Q6P589 184 aaPredicted RBP20.29■□□□□ 0.84
SMC4-221ENST00000489573 NUP43Q8NFH3 380 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 NETO1Q8TDF5 533 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 CLIP3Q96DZ5 547 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 SERHL2Q9H4I8 314 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 AKAP7Q9P0M2 348 aaPredicted RBP20.29■□□□□ 0.84
SMC4-221ENST00000489573 MMACHCQ9Y4U1 282 aa20.29■□□□□ 0.84
SMC4-221ENST00000489573 COL27A1Q8IZC6 1860 aaPredicted RBP20.28■□□□□ 0.84
SMC4-221ENST00000489573 UPK1AO00322 258 aa20.28■□□□□ 0.84
SMC4-221ENST00000489573 POLR1CO15160 346 aaPredicted RBP20.28■□□□□ 0.84
SMC4-221ENST00000489573 GDF9O60383 454 aa20.28■□□□□ 0.84
SMC4-221ENST00000489573 ARAFP10398 606 aa20.28■□□□□ 0.84
SMC4-221ENST00000489573 UMPSP11172 480 aa20.28■□□□□ 0.84
SMC4-221ENST00000489573 PSMA4P25789 261 aaKnown RBP20.28■□□□□ 0.84
SMC4-221ENST00000489573 ANXA11P50995 505 aaKnown RBP20.28■□□□□ 0.84
SMC4-221ENST00000489573 MC2RQ01718 297 aa20.28■□□□□ 0.84
SMC4-221ENST00000489573 ZNF630Q2M218 657 aaPredicted RBP20.28■□□□□ 0.84
SMC4-221ENST00000489573 PRICKLE4Q2TBC4 344 aa20.28■□□□□ 0.84
SMC4-221ENST00000489573 LARP7Q4G0J3 582 aaKnown RBP eCLIP20.28■□□□□ 0.84
SMC4-221ENST00000489573 ADGRG5Q8IZF4 528 aa20.28■□□□□ 0.84
SMC4-221ENST00000489573 ST13P4Q8IZP2 240 aaPredicted RBP20.28■□□□□ 0.84
SMC4-221ENST00000489573 OR2L13Q8N349 312 aa20.28■□□□□ 0.84
SMC4-221ENST00000489573 CANT1Q8WVQ1 401 aa20.28■□□□□ 0.84
SMC4-221ENST00000489573 MS4A4EQ96PG1 132 aa20.28■□□□□ 0.84
SMC4-221ENST00000489573 ALOXE3Q9BYJ1 711 aa20.28■□□□□ 0.84
SMC4-221ENST00000489573 MKKSQ9NPJ1 570 aaPredicted RBP20.28■□□□□ 0.84
SMC4-221ENST00000489573 THUMPD1Q9NXG2 353 aaKnown RBP20.28■□□□□ 0.84
SMC4-221ENST00000489573 MAT2BQ9NZL9 334 aa20.28■□□□□ 0.84
SMC4-221ENST00000489573 PCDHGA1Q9Y5H4 931 aa20.28■□□□□ 0.84
SMC4-221ENST00000489573 CLDN16Q9Y5I7 305 aa20.28■□□□□ 0.84
SMC4-221ENST00000489573 A0A087WV62 115 aa20.27■□□□□ 0.84
SMC4-221ENST00000489573 BAG2O95816 211 aa20.27■□□□□ 0.84
SMC4-221ENST00000489573 HMGN2P05204 90 aaKnown RBP20.27■□□□□ 0.84
SMC4-221ENST00000489573 MAOAP21397 527 aa20.27■□□□□ 0.84
SMC4-221ENST00000489573 MATN1P21941 496 aa20.27■□□□□ 0.84
SMC4-221ENST00000489573 TXNL4AP83876 142 aaKnown RBP20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms