RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 CPN2P22792 545 aa13.35□□□□□ -0.27
CUX1-209ENST00000487284 MAGEA8P43361 318 aa13.35□□□□□ -0.27
CUX1-209ENST00000487284 CCT3P49368 545 aaKnown RBP13.35□□□□□ -0.27
CUX1-209ENST00000487284 NCBP2P52298 156 aaKnown RBP eCLIP13.35□□□□□ -0.27
CUX1-209ENST00000487284 CRYBA2P53672 197 aa13.35□□□□□ -0.27
CUX1-209ENST00000487284 CLDN6P56747 220 aa13.35□□□□□ -0.27
CUX1-209ENST00000487284 DSTNP60981 165 aa13.35□□□□□ -0.27
CUX1-209ENST00000487284 E2F1Q01094 437 aa13.35□□□□□ -0.27
CUX1-209ENST00000487284 INSM1Q01101 510 aaPredicted RBP13.35□□□□□ -0.27
CUX1-209ENST00000487284 DUSP2Q05923 314 aa13.35□□□□□ -0.27
CUX1-209ENST00000487284 ZFP36L1Q07352 338 aaKnown RBP13.35□□□□□ -0.27
CUX1-209ENST00000487284 GPR19Q15760 415 aa13.35□□□□□ -0.27
CUX1-209ENST00000487284 SPDYE7PQ495Y7 208 aa13.35□□□□□ -0.27
CUX1-209ENST00000487284 PPP4R4Q6NUP7 873 aa13.35□□□□□ -0.27
CUX1-209ENST00000487284 RBM44Q6ZP01 1051 aaKnown RBP13.35□□□□□ -0.27
CUX1-209ENST00000487284 FKBP9P1Q75LS8 142 aa13.35□□□□□ -0.27
CUX1-209ENST00000487284 CBLL1Q75N03 491 aa13.35□□□□□ -0.27
CUX1-209ENST00000487284 CCDC80Q76M96 950 aa13.35□□□□□ -0.27
CUX1-209ENST00000487284 EIF3MQ7L2H7 374 aaKnown RBP13.35□□□□□ -0.27
CUX1-209ENST00000487284 PRSS41Q7RTY9 318 aa13.35□□□□□ -0.27
CUX1-209ENST00000487284 SLCO6A1Q86UG4 719 aa13.35□□□□□ -0.27
CUX1-209ENST00000487284 SLC30A8Q8IWU4 369 aa13.35□□□□□ -0.27
CUX1-209ENST00000487284 BDH2Q9BUT1 245 aa13.35□□□□□ -0.27
CUX1-209ENST00000487284 NPLQ9BXD5 320 aaPredicted RBP13.35□□□□□ -0.27
CUX1-209ENST00000487284 C8orf4Q9NR00 106 aa13.35□□□□□ -0.27
CUX1-209ENST00000487284 SEMA3GQ9NS98 782 aa13.35□□□□□ -0.27
CUX1-209ENST00000487284 STARD5Q9NSY2 213 aa13.35□□□□□ -0.27
CUX1-209ENST00000487284 PSME2Q9UL46 239 aa13.35□□□□□ -0.27
CUX1-209ENST00000487284 PCDHGA1Q9Y5H4 931 aa13.35□□□□□ -0.27
CUX1-209ENST00000487284 NUP210LQ5VU65 1888 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 SPAARA0A1B0GVQ0 90 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 SAC3D1A6NKF1 404 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 TM4SF5O14894 197 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 SEMG1P04279 462 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 RPSAP08865 295 aaKnown RBP13.34□□□□□ -0.27
CUX1-209ENST00000487284 UQCRBP14927 111 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 CSRP1P21291 193 aaKnown RBP13.34□□□□□ -0.27
CUX1-209ENST00000487284 MAGEA2P43356 314 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 HSPA13P48723 471 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 PRIM2P49643 509 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 CASP9P55211 416 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 SCARB2Q14108 478 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 ELOAQ14241 798 aaKnown RBP13.34□□□□□ -0.27
CUX1-209ENST00000487284 TMTC4Q5T4D3 741 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 DHRS13Q6UX07 377 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 C6orf120Q7Z4R8 191 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 GALNT10Q86SR1 603 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 SAMD14Q8IZD0 417 aaPredicted RBP13.34□□□□□ -0.27
CUX1-209ENST00000487284 HORMAD2Q8N7B1 307 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 N4BP2L2Q92802 583 aaPredicted RBP13.34□□□□□ -0.27
CUX1-209ENST00000487284 MOAP1Q96BY2 351 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 ZNF597Q96LX8 424 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 CSF3RQ99062 836 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 SLC29A1Q99808 456 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 C9orf16Q9BUW7 83 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 NTN4Q9HB63 628 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 A4GALTQ9NPC4 353 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 DNAJB9Q9UBS3 223 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 ZNF639Q9UID6 485 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 NAALAD2Q9Y3Q0 740 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 ZNF780BQ9Y6R6 833 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 NINQ8N4C6 2090 aa13.34□□□□□ -0.27
CUX1-209ENST00000487284 A0A1W2PS29 197 aa13.33□□□□□ -0.28
CUX1-209ENST00000487284 ZNF860A6NHJ4 632 aa13.33□□□□□ -0.28
CUX1-209ENST00000487284 TMEM150CB9EJG8 249 aa13.33□□□□□ -0.28
CUX1-209ENST00000487284 UPK1AO00322 258 aa13.33□□□□□ -0.28
CUX1-209ENST00000487284 SOCS2O14508 198 aa13.33□□□□□ -0.28
CUX1-209ENST00000487284 ACOX3O15254 700 aa13.33□□□□□ -0.28
CUX1-209ENST00000487284 DNAJB6O75190 326 aa13.33□□□□□ -0.28
CUX1-209ENST00000487284 ZNF682O95780 498 aa13.33□□□□□ -0.28
CUX1-209ENST00000487284 TLX1P31314 330 aaPredicted RBP13.33□□□□□ -0.28
CUX1-209ENST00000487284 MPIP34949 423 aa13.33□□□□□ -0.28
CUX1-209ENST00000487284 GPC1P35052 558 aa13.33□□□□□ -0.28
CUX1-209ENST00000487284 PCBP3P57721 371 aaKnown RBP13.33□□□□□ -0.28
CUX1-209ENST00000487284 OLR1P78380 273 aa13.33□□□□□ -0.28
CUX1-209ENST00000487284 CDK6Q00534 326 aa13.33□□□□□ -0.28
CUX1-209ENST00000487284 TRA2AQ13595 282 aaKnown RBP eCLIP13.33□□□□□ -0.28
CUX1-209ENST00000487284 ZNF750Q32MQ0 723 aa13.33□□□□□ -0.28
CUX1-209ENST00000487284 CEACAM20Q6UY09 585 aa13.33□□□□□ -0.28
CUX1-209ENST00000487284 ZBTB49Q6ZSB9 765 aa13.33□□□□□ -0.28
CUX1-209ENST00000487284 CCDC116Q8IYX3 515 aa13.33□□□□□ -0.28
CUX1-209ENST00000487284 GALNT4Q8N4A0 578 aa13.33□□□□□ -0.28
CUX1-209ENST00000487284 NFKBIDQ8NI38 313 aa13.33□□□□□ -0.28
CUX1-209ENST00000487284 SERHL2Q9H4I8 314 aa13.33□□□□□ -0.28
CUX1-209ENST00000487284 FGF21Q9NSA1 209 aa13.33□□□□□ -0.28
CUX1-209ENST00000487284 IRAK4Q9NWZ3 460 aa13.33□□□□□ -0.28
CUX1-209ENST00000487284 RAB26Q9ULW5 256 aa13.33□□□□□ -0.28
CUX1-209ENST00000487284 OAZ3Q9UMX2 235 aa13.33□□□□□ -0.28
CUX1-209ENST00000487284 SPACA6W5XKT8 324 aa13.33□□□□□ -0.28
CUX1-209ENST00000487284 H3BMH7 237 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 HYAL3O43820 417 aaPredicted RBP13.32□□□□□ -0.28
CUX1-209ENST00000487284 FTH1P19P0C7X4 201 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 MSL3P1P0C860 447 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 C8orf89P0DMQ9 161 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 CCKBRP32239 447 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 FEN1P39748 380 aaKnown RBP13.32□□□□□ -0.28
CUX1-209ENST00000487284 RPS26P62854 115 aaKnown RBP13.32□□□□□ -0.28
CUX1-209ENST00000487284 TP53BP2Q13625 1128 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 MYBPC3Q14896 1274 aa13.32□□□□□ -0.28
CUX1-209ENST00000487284 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms