RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 SPEF2Q9C093 1822 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 TNS2Q63HR2 1409 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 IGHV3OR16-10A0A075B7F0 116 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 ZNF233A6NK53 670 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 ANKRD65E5RJM6 399 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 NPIPB9F8W1W9 429 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 PI4K2BG5E9Z4 385 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 SLC1A7O00341 560 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 STAG3L1P0CL83 205 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 SPP1P10451 314 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 RBMS1P29558 406 aaKnown RBP4.93□□□□□ -1.62
USP40-213ENST00000483216 EPS15P42566 896 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 CDX1P47902 265 aaPredicted RBP4.93□□□□□ -1.62
USP40-213ENST00000483216 IL9RQ01113 521 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 LRRC63Q05C16 580 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 TJP1Q07157 1748 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 CYLC2Q14093 348 aaPredicted RBP4.93□□□□□ -1.62
USP40-213ENST00000483216 TAZQ16635 292 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 RABL6Q3YEC7 729 aaPredicted RBP4.93□□□□□ -1.62
USP40-213ENST00000483216 TTMPQ5BVD1 217 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 FGD3Q5JSP0 725 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 TTC19Q6DKK2 380 aaPredicted RBP4.93□□□□□ -1.62
USP40-213ENST00000483216 OR4C11Q6IEV9 310 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 SUSD1Q6UWL2 747 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 TRMT10CQ7L0Y3 403 aaKnown RBP4.93□□□□□ -1.62
USP40-213ENST00000483216 CSGALNACT2Q8N6G5 542 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 OR4C15Q8NGM1 316 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 OCC1Q8TAD7 63 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 FAM222BQ8WU58 562 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 UBLCP1Q8WVY7 318 aaPredicted RBP4.93□□□□□ -1.62
USP40-213ENST00000483216 DNAJC9Q8WXX5 260 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 TEKT1Q969V4 418 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 FMO2Q99518 471 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 MGME1Q9BQP7 344 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 GPATCH1Q9BRR8 931 aaKnown RBP4.93□□□□□ -1.62
USP40-213ENST00000483216 TUBGCP2Q9BSJ2 902 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 YIPF3Q9GZM5 350 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 RNPEPL1Q9HAU8 725 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 SAR1AQ9NR31 198 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 SLC12A6Q9UHW9 1150 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 ANAPC5Q9UJX4 755 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 FBXL4Q9UKA2 621 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 PILRBQ9UKJ0 227 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 KLK13Q9UKR3 277 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 MOB4Q9Y3A3 225 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 NEDD4P46934 1319 aa4.93□□□□□ -1.62
USP40-213ENST00000483216 PCNX3Q9H6A9 2034 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 TOGARAM1Q9Y4F4 1720 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 TTC26A0AVF1 554 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 MACROD2A1Z1Q3 448 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 SURF4O15260 269 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 RANBP6O60518 1105 aaKnown RBP4.92□□□□□ -1.62
USP40-213ENST00000483216 CYTIPO60759 359 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 CCDC22O60826 627 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 PRAF2O60831 178 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 KRT14P02533 472 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 RPN1P04843 607 aaKnown RBP4.92□□□□□ -1.62
USP40-213ENST00000483216 YES1P07947 543 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 UQCRFS1P1P0C7P4 283 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 CCNB1P14635 433 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 CCNE1P24864 410 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 DUTP33316 252 aaKnown RBP4.92□□□□□ -1.62
USP40-213ENST00000483216 NPY4RP50391 375 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 SLC18A1P54219 525 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 LMO4P61968 165 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 RIPPLY1Q0D2K3 151 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 BNIP1Q12981 228 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 TNK1Q13470 666 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 FAM166AQ6J272 317 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 TTC27Q6P3X3 843 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 FUT10Q6P4F1 479 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 PAQR6Q6TCH4 344 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 MOXD1Q6UVY6 613 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 DNAJB7Q7Z6W7 309 aaPredicted RBP4.92□□□□□ -1.62
USP40-213ENST00000483216 VSIG1Q86XK7 387 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 METTL4Q8N3J2 472 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 AQP11Q8NBQ7 271 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 C11orf45Q8TAV5 145 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 CHURC1Q8WUH1 139 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 C17orf50Q8WW18 174 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 RAPGEF5Q92565 580 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 KIFAP3Q92845 792 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 SIPA1Q96FS4 1042 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 SERPINB12Q96P63 405 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 TIPINQ9BVW5 301 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 DNAI2Q9GZS0 605 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 SH3GLB2Q9NR46 395 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 PHPT1Q9NRX4 125 aaPredicted RBP4.92□□□□□ -1.62
USP40-213ENST00000483216 GIMAP2Q9UG22 337 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 MROH7Q68CQ1 1323 aa4.92□□□□□ -1.62
USP40-213ENST00000483216 PVALEFA0A1B0GWK0 134 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 MIF4GDA9UHW6 222 aaKnown RBP4.91□□□□□ -1.62
USP40-213ENST00000483216 TRAFD1O14545 582 aaPredicted RBP4.91□□□□□ -1.62
USP40-213ENST00000483216 TFECO14948 347 aaPredicted RBP4.91□□□□□ -1.62
USP40-213ENST00000483216 WDR46O15213 610 aaKnown RBP4.91□□□□□ -1.62
USP40-213ENST00000483216 NVLO15381 856 aaKnown RBP4.91□□□□□ -1.62
USP40-213ENST00000483216 PI15O43692 258 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 PDHBP11177 359 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 PDGFRAP16234 1089 aa4.91□□□□□ -1.62
USP40-213ENST00000483216 ADRA2CP18825 462 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms