RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 HBEGFQ99075 208 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 ZDHHC11Q9H8X9 412 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 IL1RL2Q9HB29 575 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 TMEM216Q9P0N5 145 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 ADAM29Q9UKF5 820 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 SNX6Q9UNH7 406 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 POLQO75417 2590 aa14.5□□□□□ -0.09
CCDC88B-205ENST00000472524 ATP6AP2A0A1C7CYW4 349 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 OR6C76A6NM76 312 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 NPIPA2E9PIF3 369 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 NPIPA3F8WFD2 350 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 GOLGA8RI6L899 631 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 ATP6AP2O75787 350 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 SUPT7LO94864 414 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 GLSO94925 669 aaPredicted RBP14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 LRATO95237 230 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 CLPSP04118 112 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 NT5EP21589 574 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 SSTR2P30874 369 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 GALNSP34059 522 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 MAPK12P53778 367 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 CLCQ05315 142 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 TCHHL1Q5QJ38 904 aaPredicted RBP14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 C6orf163Q5TEZ5 329 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 SLC22A10Q63ZE4 541 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 LYPD8Q6UX82 237 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 TIFABQ6ZNK6 161 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 GALNT12Q8IXK2 581 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 GSPT2Q8IYD1 628 aaKnown RBP14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 FAM109AQ8N4B1 249 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 SLC15A4Q8N697 577 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 MYRIPQ8NFW9 859 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 OR10G3Q8NGC4 313 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 OR4K14Q8NGD5 310 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 OR5M3Q8NGP4 307 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 TMEM237Q96Q45 408 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 C1QTNF3Q9BXJ4 246 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 TP63Q9H3D4 680 aaPredicted RBP14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 CXorf21Q9HAI6 301 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 COQ3Q9NZJ6 369 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 TRPS1Q9UHF7 1281 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 HRH3Q9Y5N1 445 aa14.49□□□□□ -0.09
CCDC88B-205ENST00000472524 C2orf92A0A1B0GVN3 265 aa14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 CELA3AP09093 270 aa14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 CT62P0C5K7 136 aa14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 HSD17B3P37058 310 aa14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 XKP51811 444 aa14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 RIPPLY3P57055 190 aa14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 KCNJ2P63252 427 aa14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 FOXO1Q12778 655 aa14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 UNC50Q53HI1 259 aa14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 ZNF678Q5SXM1 525 aa14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 MMP21Q8N119 569 aa14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 RPRMLQ8N4K4 120 aa14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 MARVELD2Q8N4S9 558 aa14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 CDYL2Q8N8U2 506 aa14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 OR5M9Q8NGP3 310 aa14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 PAQR8Q8TEZ7 354 aa14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 CA5BP1Q8WTZ4 195 aa14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 SMC6Q96SB8 1091 aa14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 LDAHQ9H6V9 325 aa14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 BRF2Q9HAW0 419 aa14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 SH2D2AQ9NP31 389 aa14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 PSMC3IPQ9P2W1 217 aaPredicted RBP14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 TNFRSF10DQ9UBN6 386 aa14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 TBK1Q9UHD2 729 aa14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 ZNF225Q9UK10 706 aa14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.48□□□□□ -0.09
CCDC88B-205ENST00000472524 DLX3O60479 287 aa14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 ERAL1O75616 437 aaKnown RBP14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 FBXO45P0C2W1 286 aa14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 CPMP14384 443 aa14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 SERPINB3P29508 390 aa14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 DEKP35659 375 aaKnown RBP14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 GALNT1Q10472 559 aaPredicted RBP14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 TBL3Q12788 808 aaKnown RBP14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 SLC29A2Q14542 456 aa14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 EMC4Q5J8M3 183 aa14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 HLA-DQA1Q5Y7H0 255 aa14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 TMEM211Q6ICI0 200 aa14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 TMEM64Q6YI46 380 aa14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 TRILQ7L0X0 811 aa14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 DND1Q8IYX4 353 aaKnown RBP14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 TAGAPQ8N103 731 aa14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 FBXW8Q8N3Y1 598 aa14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 C1orf52Q8N6N3 182 aaKnown RBP14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 LRRN4CLQ8ND94 238 aa14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 TRIM44Q96DX7 344 aaPredicted RBP14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 JSRP1Q96MG2 331 aaPredicted RBP14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 SPOCK3Q9BQ16 436 aa14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 EXO5Q9H790 373 aa14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 PNPLA3Q9NST1 481 aa14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 BOKQ9UMX3 212 aaPredicted RBP14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 PCDHA9Q9Y5H5 950 aa14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 F8P00451 2351 aa14.47□□□□□ -0.09
CCDC88B-205ENST00000472524 MED12Q93074 2177 aa14.46□□□□□ -0.09
CCDC88B-205ENST00000472524 C1orf226A1L170 272 aa14.46□□□□□ -0.09
CCDC88B-205ENST00000472524 MANBAO00462 879 aa14.46□□□□□ -0.09
CCDC88B-205ENST00000472524 GUCY1B2O75343 617 aa14.46□□□□□ -0.09
CCDC88B-205ENST00000472524 IGHG3P01860 377 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms