RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 TM9SF4Q92544 642 aa11.12□□□□□ -0.63
VPS13D-204ENST00000469054 PPCDCQ96CD2 204 aa11.12□□□□□ -0.63
VPS13D-204ENST00000469054 MTERF3Q96E29 417 aa11.12□□□□□ -0.63
VPS13D-204ENST00000469054 ZNF764Q96H86 408 aaPredicted RBP11.12□□□□□ -0.63
VPS13D-204ENST00000469054 ZNF354BQ96LW1 612 aa11.12□□□□□ -0.63
VPS13D-204ENST00000469054 BBS4Q96RK4 519 aa11.12□□□□□ -0.63
VPS13D-204ENST00000469054 BRINP2Q9C0B6 783 aa11.12□□□□□ -0.63
VPS13D-204ENST00000469054 CDCP1Q9H5V8 836 aa11.12□□□□□ -0.63
VPS13D-204ENST00000469054 EPS8L2Q9H6S3 715 aa11.12□□□□□ -0.63
VPS13D-204ENST00000469054 ZBTB20Q9HC78 741 aaPredicted RBP11.12□□□□□ -0.63
VPS13D-204ENST00000469054 STMN3Q9NZ72 180 aa11.12□□□□□ -0.63
VPS13D-204ENST00000469054 SH3BP4Q9P0V3 963 aa11.12□□□□□ -0.63
VPS13D-204ENST00000469054 ATP6V1HQ9UI12 483 aa11.12□□□□□ -0.63
VPS13D-204ENST00000469054 ERVK-19Q9WJR5 959 aa11.12□□□□□ -0.63
VPS13D-204ENST00000469054 NUP210LQ5VU65 1888 aa11.12□□□□□ -0.63
VPS13D-204ENST00000469054 SCAMP2O15127 329 aaKnown RBP11.11□□□□□ -0.63
VPS13D-204ENST00000469054 PRKNO60260 465 aaPredicted RBP11.11□□□□□ -0.63
VPS13D-204ENST00000469054 DPM1O60762 260 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 EDF1O60869 148 aaKnown RBP11.11□□□□□ -0.63
VPS13D-204ENST00000469054 DIAPH2O60879 1101 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 ALDOCP09972 364 aaKnown RBP11.11□□□□□ -0.63
VPS13D-204ENST00000469054 PCSK2P16519 638 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 DDX5P17844 614 aaKnown RBP11.11□□□□□ -0.63
VPS13D-204ENST00000469054 PRPS1L1P21108 318 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 NTSP30990 170 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 HPCAL1P37235 193 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 RPL3P39023 403 aaKnown RBP11.11□□□□□ -0.63
VPS13D-204ENST00000469054 MDH1P40925 334 aaKnown RBP11.11□□□□□ -0.63
VPS13D-204ENST00000469054 CLDN8P56748 225 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 MGAT2Q10469 447 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 MAP4K2Q12851 820 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 MEP1AQ16819 746 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 ZNF385BQ569K4 471 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 ACER2Q5QJU3 275 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 C6orf163Q5TEZ5 329 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 NXNQ6DKJ4 435 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 ANKRD26P1Q6NSI1 321 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 FAM111BQ6SJ93 734 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 EPGNQ6UW88 154 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 SPATA19Q7Z5L4 167 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 FAM9CQ8IZT9 166 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 LGI4Q8N135 537 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 ARMC10Q8N2F6 343 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 ADCY4Q8NFM4 1077 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 OR7G1Q8NGA0 311 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 OR9A2Q8NGT5 310 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 CEP70Q8NHQ1 597 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 ZNF675Q8TD23 568 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 CTHRC1Q96CG8 243 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 OR52B2Q96RD2 323 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 PRPF18Q99633 342 aaKnown RBP11.11□□□□□ -0.63
VPS13D-204ENST00000469054 NPAS2Q99743 824 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 MAT2BQ9NZL9 334 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 RALYQ9UKM9 306 aaKnown RBP11.11□□□□□ -0.63
VPS13D-204ENST00000469054 MAPRE3Q9UPY8 281 aa11.11□□□□□ -0.63
VPS13D-204ENST00000469054 DSPP15924 2871 aaKnown RBP11.1□□□□□ -0.63
VPS13D-204ENST00000469054 SCN2AQ99250 2005 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 TMEM200CA6NKL6 621 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 PDPK1O15530 556 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 MAN1A2O60476 641 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 CLPSP04118 112 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 S1PR1P21453 382 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 SSTR4P31391 388 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 PTGER1P34995 402 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 SOX18P35713 384 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 IDH3AP50213 366 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 NCBP2P52298 156 aaKnown RBP eCLIP11.1□□□□□ -0.63
VPS13D-204ENST00000469054 AQP5P55064 265 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 SLC37A1P57057 533 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 MLF1P58340 268 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 C21orf58P58505 322 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 RNF4P78317 190 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 LTB4RQ15722 352 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 MPEG1Q2M385 716 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 LSM12Q3MHD2 195 aaKnown RBP11.1□□□□□ -0.63
VPS13D-204ENST00000469054 TRMT12Q53H54 448 aaKnown RBP11.1□□□□□ -0.63
VPS13D-204ENST00000469054 ZNF628Q5EBL2 1059 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 CPTPQ5TA50 214 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 RNF111Q6ZNA4 994 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 ACAD11Q709F0 780 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 RIMKLAQ8IXN7 391 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 BEST3Q8N1M1 668 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 VWA5B2Q8N398 1253 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 ZADH2Q8N4Q0 377 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 KRTCAP2Q8N6L1 136 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 RBMXL3Q8N7X1 1067 aaKnown RBP11.1□□□□□ -0.63
VPS13D-204ENST00000469054 OR7A2PQ8NGA2 310 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 OR5L2Q8NGL0 311 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 NUBPLQ8TB37 319 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 THAP3Q8WTV1 239 aaPredicted RBP11.1□□□□□ -0.63
VPS13D-204ENST00000469054 HAS2Q92819 552 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 CIDECQ96AQ7 238 aaPredicted RBP11.1□□□□□ -0.63
VPS13D-204ENST00000469054 AMDHD1Q96NU7 426 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 DPY30Q9C005 99 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 GLIPR2Q9H4G4 154 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 CCDC134Q9H6E4 229 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 SLAMF7Q9NQ25 335 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.1□□□□□ -0.63
VPS13D-204ENST00000469054 PLA2G3Q9NZ20 509 aa11.1□□□□□ -0.63
VPS13D-204ENST00000469054 ABI3Q9P2A4 366 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms