RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 IFT52Q9Y366 437 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 ATG4BQ9Y4P1 393 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 SPTBN5Q9NRC6 3674 aaKnown RBP8.46□□□□□ -1.06
SYNE1-217ENST00000466159 SCN3AQ9NY46 2000 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 A0A1W2PR48 441 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 METTL15A6NJ78 407 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 GPR89AB7ZAQ6 455 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 H3BN98 237 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 TLR4O00206 839 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 MAN2B1O00754 1011 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 CNOT3O75175 753 aaKnown RBP8.45□□□□□ -1.06
SYNE1-217ENST00000466159 SERPINB7O75635 380 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 APODP05090 189 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 GPR89BP0CG08 455 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 C8orf89P0DMQ9 161 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 DRD2P14416 443 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 DDX5P17844 614 aaKnown RBP8.45□□□□□ -1.06
SYNE1-217ENST00000466159 PKLRP30613 574 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 TUBA1BP68363 451 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 TARDBPQ13148 414 aaKnown RBP eCLIP8.45□□□□□ -1.06
SYNE1-217ENST00000466159 SGCGQ13326 291 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 ILKQ13418 452 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 COL9A2Q14055 689 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-217ENST00000466159 SLC9A5Q14940 896 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 MLC1Q15049 377 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 AGERQ15109 404 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 ZIC1Q15915 447 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 UAP1L1Q3KQV9 507 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 FBXO43Q4G163 708 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 PGBD2Q6P3X8 592 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 TUBA1AQ71U36 451 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 BCDIN3DQ7Z5W3 292 aaKnown RBP8.45□□□□□ -1.06
SYNE1-217ENST00000466159 CCDC116Q8IYX3 515 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 CLIP4Q8N3C7 705 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 TBC1D19Q8N5T2 526 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 TMEM145Q8NBT3 493 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 OR2L8Q8NGY9 312 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 OR14C36Q8NHC7 312 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 MS4A6EQ96DS6 147 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 DHRS1Q96LJ7 313 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 BBS4Q96RK4 519 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 NEURL2Q9BR09 285 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 CDCA4Q9BXL8 241 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 C6orf62Q9GZU0 229 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-217ENST00000466159 PRDM7Q9NQW5 492 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 POLE4Q9NR33 117 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 FBXL12Q9NXK8 326 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 SPHK1Q9NYA1 384 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 DNAJC27Q9NZQ0 273 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 A4GNTQ9UNA3 340 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 PCDHGA3Q9Y5H0 932 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 GPC6Q9Y625 555 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-217ENST00000466159 A0A1W2PQU0 124 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 SH3D21A4FU49 640 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 KRBA1A5PL33 1030 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 EFCAB10A6NFE3 127 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 FAAHO00519 579 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 MPZL2O60487 215 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 EPPINO95925 133 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 ADH1BP00325 375 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 CDH3P22223 829 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 PEBP1P30086 187 aaKnown RBP8.45□□□□□ -1.06
SYNE1-217ENST00000466159 GDI1P31150 447 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 SLC15A1P46059 708 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 TRA2BP62995 288 aaKnown RBP8.45□□□□□ -1.06
SYNE1-217ENST00000466159 ENPP2Q13822 863 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 LASP1Q14847 261 aaKnown RBP8.45□□□□□ -1.06
SYNE1-217ENST00000466159 C9orf50Q5SZB4 431 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 C18orf63Q68DL7 685 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 PLAG1Q6DJT9 500 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 USP43Q70EL4 1123 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 ACOT4Q8N9L9 421 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 WDR36Q8NI36 951 aaKnown RBP8.45□□□□□ -1.06
SYNE1-217ENST00000466159 SUN3Q8TAQ9 357 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 CNRIP1Q96F85 164 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-217ENST00000466159 ZNF764Q96H86 408 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-217ENST00000466159 CRELD1Q96HD1 420 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 Q96MT0 163 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 MGLLQ99685 303 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 TIMM29Q9BSF4 260 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 CDADC1Q9BWV3 514 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 POLR2J3Q9H1A7 115 aaKnown RBP8.45□□□□□ -1.06
SYNE1-217ENST00000466159 ANKRA2Q9H9E1 313 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 CTPS2Q9NRF8 586 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 CNOT2Q9NZN8 540 aaKnown RBP8.45□□□□□ -1.06
SYNE1-217ENST00000466159 SCHIP1Q9P0W5 487 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-217ENST00000466159 FBXW2Q9UKT8 454 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 ACAD8Q9UKU7 415 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 MGAT4BQ9UQ53 548 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 ASB4Q9Y574 426 aa8.45□□□□□ -1.06
SYNE1-217ENST00000466159 EYSQ5T1H1 3165 aa8.44□□□□□ -1.06
SYNE1-217ENST00000466159 F5P12259 2224 aa8.44□□□□□ -1.06
SYNE1-217ENST00000466159 PRICKLE3O43900 615 aaPredicted RBP8.44□□□□□ -1.06
SYNE1-217ENST00000466159 NME6O75414 186 aaPredicted RBP8.44□□□□□ -1.06
SYNE1-217ENST00000466159 HMGN2P05204 90 aaKnown RBP8.44□□□□□ -1.06
SYNE1-217ENST00000466159 CHRM4P08173 479 aa8.44□□□□□ -1.06
SYNE1-217ENST00000466159 TNNI3P19429 210 aa8.44□□□□□ -1.06
SYNE1-217ENST00000466159 HIST1H1TP22492 207 aaPredicted RBP8.44□□□□□ -1.06
SYNE1-217ENST00000466159 TGM1P22735 817 aa8.44□□□□□ -1.06
SYNE1-217ENST00000466159 IGFALSP35858 605 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms