RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 ZNF354AO60765 605 aaPredicted RBP17.3■□□□□ 0.36
USP39-209ENST00000458268 SEC22BO75396 215 aa17.3■□□□□ 0.36
USP39-209ENST00000458268 ERLIN1O75477 346 aa17.3■□□□□ 0.36
USP39-209ENST00000458268 WISP2O76076 250 aa17.3■□□□□ 0.36
USP39-209ENST00000458268 IGKV3-11P04433 115 aa17.3■□□□□ 0.36
USP39-209ENST00000458268 TDGF1P3P51864 188 aa17.3■□□□□ 0.36
USP39-209ENST00000458268 TRA2BP62995 288 aaKnown RBP17.3■□□□□ 0.36
USP39-209ENST00000458268 PLGLB1Q02325 96 aa17.3■□□□□ 0.36
USP39-209ENST00000458268 DUSP2Q05923 314 aa17.3■□□□□ 0.36
USP39-209ENST00000458268 C2orf80Q0P641 193 aa17.3■□□□□ 0.36
USP39-209ENST00000458268 EXOSC7Q15024 291 aaKnown RBP17.3■□□□□ 0.36
USP39-209ENST00000458268 LTB4RQ15722 352 aa17.3■□□□□ 0.36
USP39-209ENST00000458268 C1QL3Q5VWW1 255 aa17.3■□□□□ 0.36
USP39-209ENST00000458268 FAM111BQ6SJ93 734 aa17.3■□□□□ 0.36
USP39-209ENST00000458268 TMEM64Q6YI46 380 aa17.3■□□□□ 0.36
USP39-209ENST00000458268 ARMC10Q8N2F6 343 aa17.3■□□□□ 0.36
USP39-209ENST00000458268 PSD4Q8NDX1 1056 aa17.3■□□□□ 0.36
USP39-209ENST00000458268 FAM13CQ8NE31 585 aa17.3■□□□□ 0.36
USP39-209ENST00000458268 OR8K3Q8NH51 312 aa17.3■□□□□ 0.36
USP39-209ENST00000458268 TMEM109Q9BVC6 243 aa17.3■□□□□ 0.36
USP39-209ENST00000458268 WWTR1Q9GZV5 400 aa17.3■□□□□ 0.36
USP39-209ENST00000458268 GIMAP4Q9NUV9 329 aa17.3■□□□□ 0.36
USP39-209ENST00000458268 SENP1Q9P0U3 644 aa17.3■□□□□ 0.36
USP39-209ENST00000458268 ENTPD4Q9Y227 616 aa17.3■□□□□ 0.36
USP39-209ENST00000458268 PCDHGB6Q9Y5F9 930 aa17.3■□□□□ 0.36
USP39-209ENST00000458268 TRGV8A0A0C4DH27 118 aa17.29■□□□□ 0.36
USP39-209ENST00000458268 A1L4Q6 167 aa17.29■□□□□ 0.36
USP39-209ENST00000458268 KLRC4-KLRK1H3BQV0 150 aa17.29■□□□□ 0.36
USP39-209ENST00000458268 CDC40O60508 579 aaKnown RBP eCLIP17.29■□□□□ 0.36
USP39-209ENST00000458268 LRATO95237 230 aa17.29■□□□□ 0.36
USP39-209ENST00000458268 TUBBP07437 444 aa17.29■□□□□ 0.36
USP39-209ENST00000458268 LINC00032P0C843 101 aa17.29■□□□□ 0.36
USP39-209ENST00000458268 NEFHP12036 1026 aa17.29■□□□□ 0.36
USP39-209ENST00000458268 CSNK2A2P19784 350 aaPredicted RBP17.29■□□□□ 0.36
USP39-209ENST00000458268 NR0B1P51843 470 aaKnown RBP17.29■□□□□ 0.36
USP39-209ENST00000458268 SLC37A1P57057 533 aa17.29■□□□□ 0.36
USP39-209ENST00000458268 NNATQ16517 81 aa17.29■□□□□ 0.36
USP39-209ENST00000458268 GALNTL6Q49A17 601 aa17.29■□□□□ 0.36
USP39-209ENST00000458268 SH2D4BQ5SQS7 431 aa17.29■□□□□ 0.36
USP39-209ENST00000458268 ZNF324BQ6AW86 544 aaPredicted RBP17.29■□□□□ 0.36
USP39-209ENST00000458268 OPN5Q6U736 354 aa17.29■□□□□ 0.36
USP39-209ENST00000458268 FJX1Q86VR8 437 aa17.29■□□□□ 0.36
USP39-209ENST00000458268 PRR22Q8IZ63 422 aa17.29■□□□□ 0.36
USP39-209ENST00000458268 LRRC25Q8N386 305 aaPredicted RBP17.29■□□□□ 0.36
USP39-209ENST00000458268 VWA5B2Q8N398 1253 aa17.29■□□□□ 0.36
USP39-209ENST00000458268 PAIP2Q9BPZ3 127 aaKnown RBP17.29■□□□□ 0.36
USP39-209ENST00000458268 OR10A5Q9H207 317 aa17.29■□□□□ 0.36
USP39-209ENST00000458268 EML4Q9HC35 981 aaKnown RBP17.29■□□□□ 0.36
USP39-209ENST00000458268 MIEF1Q9NQG6 463 aa17.29■□□□□ 0.36
USP39-209ENST00000458268 ERRFI1Q9UJM3 462 aaPredicted RBP17.29■□□□□ 0.36
USP39-209ENST00000458268 CES1P1Q9UKY3 287 aa17.29■□□□□ 0.36
USP39-209ENST00000458268 HIVEP3Q5T1R4 2406 aa17.29■□□□□ 0.36
USP39-209ENST00000458268 A0A0G2JMM0 328 aa17.28■□□□□ 0.36
USP39-209ENST00000458268 C2orf92A0A1B0GVN3 265 aa17.28■□□□□ 0.36
USP39-209ENST00000458268 A0A1W2PPB8 328 aa17.28■□□□□ 0.36
USP39-209ENST00000458268 A0A1W2PRS3 328 aa17.28■□□□□ 0.36
USP39-209ENST00000458268 FAM166BA8MTA8 275 aa17.28■□□□□ 0.36
USP39-209ENST00000458268 KIR3DP1A8MWS1 328 aa17.28■□□□□ 0.36
USP39-209ENST00000458268 LRRTM2O43300 516 aa17.28■□□□□ 0.36
USP39-209ENST00000458268 RGS14O43566 566 aa17.28■□□□□ 0.36
USP39-209ENST00000458268 NPHS1O60500 1241 aa17.28■□□□□ 0.36
USP39-209ENST00000458268 MYZAPP0CAP1 466 aa17.28■□□□□ 0.36
USP39-209ENST00000458268 MRPS35P82673 323 aaKnown RBP17.28■□□□□ 0.36
USP39-209ENST00000458268 HSF1Q00613 529 aa17.28■□□□□ 0.36
USP39-209ENST00000458268 RBPJQ06330 500 aa17.28■□□□□ 0.36
USP39-209ENST00000458268 ZNF763Q0D2J5 394 aa17.28■□□□□ 0.36
USP39-209ENST00000458268 HEPACAMQ14CZ8 416 aa17.28■□□□□ 0.36
USP39-209ENST00000458268 EBPQ15125 230 aaKnown RBP17.28■□□□□ 0.36
USP39-209ENST00000458268 ARL13AQ5H913 290 aaPredicted RBP17.28■□□□□ 0.36
USP39-209ENST00000458268 RTL4Q6ZR62 310 aa17.28■□□□□ 0.36
USP39-209ENST00000458268 FAM47EQ6ZV65 393 aa17.28■□□□□ 0.36
USP39-209ENST00000458268 NUDCD3Q8IVD9 361 aa17.28■□□□□ 0.36
USP39-209ENST00000458268 CCDC116Q8IYX3 515 aa17.28■□□□□ 0.36
USP39-209ENST00000458268 NUBPLQ8TB37 319 aa17.28■□□□□ 0.36
USP39-209ENST00000458268 SSC4DQ8WTU2 575 aa17.28■□□□□ 0.36
USP39-209ENST00000458268 GFM2Q969S9 779 aaKnown RBP17.28■□□□□ 0.36
USP39-209ENST00000458268 MAGED4Q96JG8 741 aa17.28■□□□□ 0.36
USP39-209ENST00000458268 BBS4Q96RK4 519 aa17.28■□□□□ 0.36
USP39-209ENST00000458268 TRMOQ9BU70 441 aa17.28■□□□□ 0.36
USP39-209ENST00000458268 TRIM45Q9H8W5 580 aaPredicted RBP17.28■□□□□ 0.36
USP39-209ENST00000458268 SLC5A6Q9Y289 635 aa17.28■□□□□ 0.36
USP39-209ENST00000458268 ASPDHA6ND91 283 aa17.27■□□□□ 0.36
USP39-209ENST00000458268 SLC28A1O00337 649 aa17.27■□□□□ 0.36
USP39-209ENST00000458268 TYROBPO43914 113 aa17.27■□□□□ 0.36
USP39-209ENST00000458268 HS6ST1O60243 411 aa17.27■□□□□ 0.36
USP39-209ENST00000458268 SKAP2O75563 359 aaPredicted RBP17.27■□□□□ 0.36
USP39-209ENST00000458268 RSL1D1O76021 490 aaKnown RBP17.27■□□□□ 0.36
USP39-209ENST00000458268 CLPSP04118 112 aa17.27■□□□□ 0.36
USP39-209ENST00000458268 P04436 131 aa17.27■□□□□ 0.36
USP39-209ENST00000458268 BPGMP07738 259 aa17.27■□□□□ 0.36
USP39-209ENST00000458268 RNF224P0DH78 156 aa17.27■□□□□ 0.36
USP39-209ENST00000458268 CCL3P10147 92 aa17.27■□□□□ 0.36
USP39-209ENST00000458268 DRD2P14416 443 aa17.27■□□□□ 0.36
USP39-209ENST00000458268 DNASE1L1P49184 302 aa17.27■□□□□ 0.36
USP39-209ENST00000458268 RPL38P63173 70 aaKnown RBP17.27■□□□□ 0.36
USP39-209ENST00000458268 PIGGQ5H8A4 983 aa17.27■□□□□ 0.36
USP39-209ENST00000458268 RNFT1Q5M7Z0 435 aa17.27■□□□□ 0.36
USP39-209ENST00000458268 PRAMEF20Q5VT98 475 aa17.27■□□□□ 0.36
USP39-209ENST00000458268 EXOC3L1Q86VI1 746 aa17.27■□□□□ 0.36
USP39-209ENST00000458268 GPALPP1Q8IXQ4 340 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms