RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 SPACA9Q96E40 222 aaPredicted RBP19.6■□□□□ 0.73
HMGB3-205ENST00000455596 FAIM2Q9BWQ8 316 aa19.6■□□□□ 0.73
HMGB3-205ENST00000455596 TTTY12Q9BZ98 90 aa19.6■□□□□ 0.73
HMGB3-205ENST00000455596 GSTO2Q9H4Y5 243 aa19.6■□□□□ 0.73
HMGB3-205ENST00000455596 CACNA1DQ01668 2161 aa19.6■□□□□ 0.73
HMGB3-205ENST00000455596 NINQ8N4C6 2090 aa19.6■□□□□ 0.73
HMGB3-205ENST00000455596 C2orf92A0A1B0GVN3 265 aa19.59■□□□□ 0.73
HMGB3-205ENST00000455596 CCDC151A5D8V7 595 aa19.59■□□□□ 0.73
HMGB3-205ENST00000455596 FAM166BA8MTA8 275 aa19.59■□□□□ 0.73
HMGB3-205ENST00000455596 CT62P0C5K7 136 aa19.59■□□□□ 0.73
HMGB3-205ENST00000455596 PORP16435 677 aaPredicted RBP19.59■□□□□ 0.73
HMGB3-205ENST00000455596 NT5EP21589 574 aa19.59■□□□□ 0.73
HMGB3-205ENST00000455596 CCT5P48643 541 aa19.59■□□□□ 0.73
HMGB3-205ENST00000455596 SMSP52788 366 aa19.59■□□□□ 0.73
HMGB3-205ENST00000455596 ADORA2A-AS1P86434 159 aa19.59■□□□□ 0.73
HMGB3-205ENST00000455596 FUT7Q11130 342 aa19.59■□□□□ 0.73
HMGB3-205ENST00000455596 CCDC153Q494R4 210 aa19.59■□□□□ 0.73
HMGB3-205ENST00000455596 XKRXQ6PP77 449 aa19.59■□□□□ 0.73
HMGB3-205ENST00000455596 LYPD8Q6UX82 237 aa19.59■□□□□ 0.73
HMGB3-205ENST00000455596 SH2D5Q6ZV89 423 aa19.59■□□□□ 0.73
HMGB3-205ENST00000455596 DOLPP1Q86YN1 238 aa19.59■□□□□ 0.73
HMGB3-205ENST00000455596 CCNYL1Q8N7R7 359 aa19.59■□□□□ 0.73
HMGB3-205ENST00000455596 GBP7Q8N8V2 638 aaPredicted RBP19.59■□□□□ 0.73
HMGB3-205ENST00000455596 EPS8L3Q8TE67 593 aaKnown RBP19.59■□□□□ 0.73
HMGB3-205ENST00000455596 AGAP11Q8TF27 550 aa19.59■□□□□ 0.73
HMGB3-205ENST00000455596 PHF12Q96QT6 1004 aa19.59■□□□□ 0.73
HMGB3-205ENST00000455596 DEFB127Q9H1M4 99 aa19.59■□□□□ 0.73
HMGB3-205ENST00000455596 IL1RL2Q9HB29 575 aa19.59■□□□□ 0.73
HMGB3-205ENST00000455596 PLSCR2Q9NRY7 297 aa19.59■□□□□ 0.73
HMGB3-205ENST00000455596 CES1P1Q9UKY3 287 aa19.59■□□□□ 0.73
HMGB3-205ENST00000455596 PSME2Q9UL46 239 aa19.59■□□□□ 0.73
HMGB3-205ENST00000455596 GRID1Q9ULK0 1009 aa19.59■□□□□ 0.73
HMGB3-205ENST00000455596 ZNF407Q9C0G0 2248 aa19.59■□□□□ 0.73
HMGB3-205ENST00000455596 PHF3Q92576 2039 aaKnown RBP19.58■□□□□ 0.73
HMGB3-205ENST00000455596 DNAJC13O75165 2243 aa19.58■□□□□ 0.73
HMGB3-205ENST00000455596 G3V2L1 256 aa19.58■□□□□ 0.72
HMGB3-205ENST00000455596 ERAL1O75616 437 aaKnown RBP19.58■□□□□ 0.72
HMGB3-205ENST00000455596 PDE9AO76083 593 aa19.58■□□□□ 0.72
HMGB3-205ENST00000455596 ESRRBO95718 433 aa19.58■□□□□ 0.72
HMGB3-205ENST00000455596 PROCP04070 461 aa19.58■□□□□ 0.72
HMGB3-205ENST00000455596 TPOP07202 933 aa19.58■□□□□ 0.72
HMGB3-205ENST00000455596 SERPINB3P29508 390 aa19.58■□□□□ 0.72
HMGB3-205ENST00000455596 DNASE1L1P49184 302 aa19.58■□□□□ 0.72
HMGB3-205ENST00000455596 HTR6P50406 440 aa19.58■□□□□ 0.72
HMGB3-205ENST00000455596 NAA20P61599 178 aa19.58■□□□□ 0.72
HMGB3-205ENST00000455596 HLA-DQA1Q5Y7H0 255 aa19.58■□□□□ 0.72
HMGB3-205ENST00000455596 ARHGAP11AQ6P4F7 1023 aa19.58■□□□□ 0.72
HMGB3-205ENST00000455596 TAGAPQ8N103 731 aa19.58■□□□□ 0.72
HMGB3-205ENST00000455596 FAM57AQ8TBR7 257 aa19.58■□□□□ 0.72
HMGB3-205ENST00000455596 PAQR8Q8TEZ7 354 aa19.58■□□□□ 0.72
HMGB3-205ENST00000455596 TP53INP1Q96A56 240 aa19.58■□□□□ 0.72
HMGB3-205ENST00000455596 ACPTQ9BZG2 426 aa19.58■□□□□ 0.72
HMGB3-205ENST00000455596 OR10A5Q9H207 317 aa19.58■□□□□ 0.72
HMGB3-205ENST00000455596 ANKZF1Q9H8Y5 726 aa19.58■□□□□ 0.72
HMGB3-205ENST00000455596 SH2D2AQ9NP31 389 aa19.58■□□□□ 0.72
HMGB3-205ENST00000455596 MID1IP1Q9NPA3 183 aa19.58■□□□□ 0.72
HMGB3-205ENST00000455596 MCM8Q9UJA3 840 aa19.58■□□□□ 0.72
HMGB3-205ENST00000455596 TIMM22Q9Y584 194 aa19.58■□□□□ 0.72
HMGB3-205ENST00000455596 KLF2Q9Y5W3 355 aaPredicted RBP19.58■□□□□ 0.72
HMGB3-205ENST00000455596 E9PLN8 166 aa19.57■□□□□ 0.72
HMGB3-205ENST00000455596 CDH16O75309 829 aa19.57■□□□□ 0.72
HMGB3-205ENST00000455596 GLSO94925 669 aaPredicted RBP19.57■□□□□ 0.72
HMGB3-205ENST00000455596 FBXO45P0C2W1 286 aa19.57■□□□□ 0.72
HMGB3-205ENST00000455596 CHN1P15882 459 aa19.57■□□□□ 0.72
HMGB3-205ENST00000455596 CSNK2A2P19784 350 aaPredicted RBP19.57■□□□□ 0.72
HMGB3-205ENST00000455596 AGAP20933 346 aa19.57■□□□□ 0.72
HMGB3-205ENST00000455596 CRHR1P34998 444 aa19.57■□□□□ 0.72
HMGB3-205ENST00000455596 PIGAP37287 484 aa19.57■□□□□ 0.72
HMGB3-205ENST00000455596 ALDH9A1P49189 494 aa19.57■□□□□ 0.72
HMGB3-205ENST00000455596 NR0B1P51843 470 aaKnown RBP19.57■□□□□ 0.72
HMGB3-205ENST00000455596 SPIN4Q56A73 249 aa19.57■□□□□ 0.72
HMGB3-205ENST00000455596 SP5Q6BEB4 398 aaPredicted RBP19.57■□□□□ 0.72
HMGB3-205ENST00000455596 CD163Q86VB7 1156 aa19.57■□□□□ 0.72
HMGB3-205ENST00000455596 MMP21Q8N119 569 aa19.57■□□□□ 0.72
HMGB3-205ENST00000455596 FAM109AQ8N4B1 249 aa19.57■□□□□ 0.72
HMGB3-205ENST00000455596 ZNF615Q8N8J6 731 aa19.57■□□□□ 0.72
HMGB3-205ENST00000455596 FAM13CQ8NE31 585 aa19.57■□□□□ 0.72
HMGB3-205ENST00000455596 OR7G1Q8NGA0 311 aa19.57■□□□□ 0.72
HMGB3-205ENST00000455596 PHF10Q8WUB8 498 aaKnown RBP19.57■□□□□ 0.72
HMGB3-205ENST00000455596 KLHL29Q96CT2 875 aa19.57■□□□□ 0.72
HMGB3-205ENST00000455596 KCNA7Q96RP8 456 aa19.57■□□□□ 0.72
HMGB3-205ENST00000455596 VKORC1Q9BQB6 163 aa19.57■□□□□ 0.72
HMGB3-205ENST00000455596 ZDHHC11Q9H8X9 412 aa19.57■□□□□ 0.72
HMGB3-205ENST00000455596 TUBA8Q9NY65 449 aaPredicted RBP19.57■□□□□ 0.72
HMGB3-205ENST00000455596 ENTPD4Q9Y227 616 aa19.57■□□□□ 0.72
HMGB3-205ENST00000455596 PCNX1Q96RV3 2341 aa19.57■□□□□ 0.72
HMGB3-205ENST00000455596 H3BQF6 201 aa19.56■□□□□ 0.72
HMGB3-205ENST00000455596 COPEO14579 308 aa19.56■□□□□ 0.72
HMGB3-205ENST00000455596 PCDH7O60245 1069 aa19.56■□□□□ 0.72
HMGB3-205ENST00000455596 PLIN3O60664 434 aa19.56■□□□□ 0.72
HMGB3-205ENST00000455596 ATP1B1P05026 303 aa19.56■□□□□ 0.72
HMGB3-205ENST00000455596 FREM3P0C091 2139 aa19.56■□□□□ 0.72
HMGB3-205ENST00000455596 FEN1P39748 380 aaKnown RBP19.56■□□□□ 0.72
HMGB3-205ENST00000455596 ACSM2AQ08AH3 577 aa19.56■□□□□ 0.72
HMGB3-205ENST00000455596 HYAL4Q2M3T9 481 aa19.56■□□□□ 0.72
HMGB3-205ENST00000455596 ACSM2BQ68CK6 577 aa19.56■□□□□ 0.72
HMGB3-205ENST00000455596 VWA5B2Q8N398 1253 aa19.56■□□□□ 0.72
HMGB3-205ENST00000455596 FBXW8Q8N3Y1 598 aa19.56■□□□□ 0.72
HMGB3-205ENST00000455596 ZNF441Q8N8Z8 693 aa19.56■□□□□ 0.72
HMGB3-205ENST00000455596 CCDC63Q8NA47 563 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms