RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 TMCO6Q96DC7 493 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 TCTN2Q96GX1 697 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 MS4A4EQ96PG1 132 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 PARP14Q460N5 1801 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 SRPX2O60687 465 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-213ENST00000448038 TRMUO75648 421 aaKnown RBP7.03□□□□□ -1.28
SYNE1-213ENST00000448038 ALDOCP09972 364 aaKnown RBP7.03□□□□□ -1.28
SYNE1-213ENST00000448038 SYCE2Q6PIF2 218 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 TECPR1Q7Z6L1 1165 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 ZNF683Q8IZ20 524 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 ZNF433Q8N7K0 673 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-213ENST00000448038 C19orf47Q8N9M1 422 aaKnown RBP7.03□□□□□ -1.28
SYNE1-213ENST00000448038 OR9A4Q8NGU2 314 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 OR2AJ1Q8NGZ0 328 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 STON2Q8WXE9 905 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 CMKLR1Q99788 373 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 CHCHD6Q9BRQ6 235 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 TOR3AQ9H497 397 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 CKLFQ9UBR5 152 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 NPIPA5E9PKD4 350 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 PGRMC2O15173 223 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 PLRG1O43660 514 aaKnown RBP7.02□□□□□ -1.29
SYNE1-213ENST00000448038 TLX2O43763 284 aaPredicted RBP7.02□□□□□ -1.29
SYNE1-213ENST00000448038 NR4A1P22736 598 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 EMP2P54851 167 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 TXNL4AP83876 142 aaKnown RBP7.02□□□□□ -1.29
SYNE1-213ENST00000448038 NDUFAF6Q330K2 333 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 SFT2D3Q587I9 215 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 CES4AQ5XG92 561 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 LCN8Q6JVE9 175 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 ENPP6Q6UWR7 440 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 SHISA6Q6ZSJ9 500 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 VTCN1Q7Z7D3 282 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 VWA5B2Q8N398 1253 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 METTL4Q8N3J2 472 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 L3MBTL4Q8NA19 623 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 MFSD2AQ8NA29 543 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 SP7Q8TDD2 431 aaPredicted RBP7.02□□□□□ -1.29
SYNE1-213ENST00000448038 GNPDA2Q8TDQ7 276 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 PPP4R1LQ9P1A2 415 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 NPIPA1Q9UND3 350 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 A0A0G2JPF8 293 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 CXorf51AA0A1B0GTR3 108 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 ANTXRLA6NF34 631 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 C17orf105B2RV13 164 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 HNRNPCL3B7ZW38 293 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 DBIP07108 87 aaKnown RBP7.02□□□□□ -1.29
SYNE1-213ENST00000448038 HNRNPCL4P0DMR1 293 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 PTGER1P34995 402 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 NUDT6P53370 316 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 RBM48Q5RL73 367 aaKnown RBP7.02□□□□□ -1.29
SYNE1-213ENST00000448038 C6orf132Q5T0Z8 1188 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 PDSS1Q5T2R2 415 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 AGBL4Q5VU57 503 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 KIAA1211LQ6NV74 962 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 P4HA3Q7Z4N8 544 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 CDRT4Q8N9R6 151 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 ENKURQ8TC29 256 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 PROKR1Q8TCW9 393 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 MTHFD2LQ9H903 347 aaPredicted RBP7.02□□□□□ -1.29
SYNE1-213ENST00000448038 CXorf21Q9HAI6 301 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 EURLQ9NYK6 297 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 KLF15Q9UIH9 416 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 OR51B4Q9Y5P0 310 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 PLXNA1Q9UIW2 1896 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 HAT1O14929 419 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 LDOC1O95751 146 aaPredicted RBP7.02□□□□□ -1.29
SYNE1-213ENST00000448038 T-ENOLP0DO92 83 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 RHCEP18577 417 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 SLC6A6P31641 620 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 PFN3P60673 137 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 HTR4Q13639 388 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 EXOC3L2Q2M3D2 409 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 KIAA1614Q5VZ46 1190 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 Q6ZS52 159 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 SPRED2Q7Z698 418 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 P2RY8Q86VZ1 359 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 ZSWIM9Q86XI8 627 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 SPEM1Q8N4L4 309 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 KIAA1958Q8N8K9 716 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 SLC37A2Q8TED4 501 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 OSTF1Q92882 214 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 POLR2J2Q9GZM3 115 aaKnown RBP7.02□□□□□ -1.29
SYNE1-213ENST00000448038 CLMPQ9H6B4 373 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 LTB4R2Q9NPC1 389 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 TBC1D29Q9UFV1 150 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 AP1M2Q9Y6Q5 423 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 ARNTLO00327 626 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 UBFD1O14562 309 aaKnown RBP7.02□□□□□ -1.29
SYNE1-213ENST00000448038 NARSO43776 548 aaKnown RBP7.02□□□□□ -1.29
SYNE1-213ENST00000448038 CCR5P51681 352 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 NPTX1Q15818 432 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 ATCAYQ86WG3 371 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 PPP1R3BQ86XI6 285 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 PDSS2Q86YH6 399 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 NETO1Q8TDF5 533 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 CNDP2Q96KP4 475 aaKnown RBP7.02□□□□□ -1.29
SYNE1-213ENST00000448038 GORASP1Q9BQQ3 440 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 C1QTNF2Q9BXJ5 285 aa7.02□□□□□ -1.29
SYNE1-213ENST00000448038 PLGRKTQ9HBL7 147 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms