RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, human

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSH6-204	ENST00000445503	GPSM3	Q9Y4H4	160 aa		11.28	□□□□□ -0.6
MSH6-204	ENST00000445503	HSPB11	Q9Y547	144 aa		11.28	□□□□□ -0.6
MSH6-204	ENST00000445503		K7ESM1	405 aa		11.27	□□□□□ -0.6
MSH6-204	ENST00000445503	CCR8	P51685	355 aa		11.27	□□□□□ -0.6
MSH6-204	ENST00000445503	TAP2	Q03519	686 aa		11.27	□□□□□ -0.6
MSH6-204	ENST00000445503	ZNF311	Q5JNZ3	666 aa		11.27	□□□□□ -0.6
MSH6-204	ENST00000445503	ASTL	Q6HA08	431 aa	Predicted RBP	11.27	□□□□□ -0.6
MSH6-204	ENST00000445503	PODNL1	Q6PEZ8	512 aa		11.27	□□□□□ -0.6
MSH6-204	ENST00000445503	FAM129C	Q86XR2	697 aa		11.27	□□□□□ -0.6
MSH6-204	ENST00000445503	SYT14	Q8NB59	555 aa		11.27	□□□□□ -0.6
MSH6-204	ENST00000445503	JPH3	Q8WXH2	748 aa	Predicted RBP	11.27	□□□□□ -0.6
MSH6-204	ENST00000445503	FYTTD1	Q96QD9	318 aa	Known RBP	11.27	□□□□□ -0.6
MSH6-204	ENST00000445503	NRTN	Q99748	197 aa		11.27	□□□□□ -0.6
MSH6-204	ENST00000445503	C1GALT1	Q9NS00	363 aa		11.27	□□□□□ -0.6
MSH6-204	ENST00000445503	CUEDC1	Q9NWM3	386 aa	Predicted RBP	11.27	□□□□□ -0.6
MSH6-204	ENST00000445503	CCDC88C	Q9P219	2028 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	TRIM64B	A6NI03	449 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	HNRNPCL2	B2RXH8	293 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	NCR1	O76036	304 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	FGF18	O76093	207 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	PRNP	P04156	253 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	XCR1	P46094	333 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	BAK1	Q16611	211 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	ADAMTS15	Q8TE58	950 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	ADAMTS19	Q8TE59	1207 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	RASSF5	Q8WWW0	418 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	ZNF689	Q96CS4	500 aa	Predicted RBP	11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	OMA1	Q96E52	524 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	CPEB1	Q9BZB8	566 aa	Known RBP	11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	PLCXD1	Q9NUJ7	323 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	RABL2A	Q9UBK7	228 aa	Predicted RBP	11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	SDK1	Q7Z5N4	2213 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	GUCY1B2	O75343	617 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	PRKRA	O75569	313 aa	Known RBP	11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	DEFB103A	P81534	67 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	CDC73	Q6P1J9	531 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	LUZP2	Q86TE4	346 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	TMEM150A	Q86TG1	271 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	OR10H4	Q8NGA5	316 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	OR8H1	Q8NGG4	311 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	ASB15	Q8WXK1	588 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	RGMA	Q96B86	450 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	SPRTN	Q9H040	489 aa	Predicted RBP	11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	EGLN3	Q9H6Z9	239 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	CNOT2	Q9NZN8	540 aa	Known RBP	11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	HCN2	Q9UL51	889 aa		11.27	□□□□□ -0.61
MSH6-204	ENST00000445503	LRRTM2	O43300	516 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	APEX1	P27695	318 aa	Known RBP	11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	MAPK9	P45984	424 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	SLAMF1	Q13291	335 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	LARS2	Q15031	903 aa	Known RBP	11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	CDKN3	Q16667	212 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	C11orf24	Q96F05	449 aa	Predicted RBP	11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	ZFP3	Q96NJ6	502 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	PLSCR3	Q9NRY6	295 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	KCNK6	Q9Y257	313 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	CKAP5	Q14008	2032 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	ZNF24	P17028	368 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	CPN2	P22792	545 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	GPR4	P46093	362 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	MAN2A2	P49641	1150 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	CDC20	Q12834	499 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	TCTN1	Q2MV58	587 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	SLC30A6	Q6NXT4	461 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	ARL9	Q6T311	187 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	PARS2	Q7L3T8	475 aa	Known RBP	11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	SLC39A11	Q8N1S5	342 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	OR51G2	Q8NGK0	314 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	OR56A3	Q8NH54	315 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	PIGX	Q8TBF5	258 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	CXorf40B	Q96DE9	158 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	OPALIN	Q96PE5	141 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	RC3H2	Q9HBD1	1191 aa	Known RBP	11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	IL21	Q9HBE4	155 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	BEX1	Q9HBH7	125 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	NEUROD4	Q9HD90	331 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	UCKL1	Q9NWZ5	548 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	FAM172BP	A6NC97	362 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	PRKY	O43930	277 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	CLTB	P09497	229 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	MPP7	Q5T2T1	576 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	KHDRBS2	Q5VWX1	349 aa	Known RBP	11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	BHLHB9	Q6PI77	547 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	GRASP	Q7Z6J2	395 aa	Predicted RBP	11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	NEIL3	Q8TAT5	605 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	FAM46A	Q96IP4	442 aa	Known RBP	11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	LYSMD1	Q96S90	227 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	TREX2	Q9BQ50	279 aa	Predicted RBP	11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	MYNN	Q9NPC7	610 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	IRAK3	Q9Y616	596 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	ZSWIM8	A7E2V4	1837 aa		11.26	□□□□□ -0.61
MSH6-204	ENST00000445503	TET1	Q8NFU7	2136 aa		11.25	□□□□□ -0.61
MSH6-204	ENST00000445503	WASH3P	C4AMC7	463 aa		11.25	□□□□□ -0.61
MSH6-204	ENST00000445503	BMP7	P18075	431 aa		11.25	□□□□□ -0.61
MSH6-204	ENST00000445503	MAP2K3	P46734	347 aa		11.25	□□□□□ -0.61
MSH6-204	ENST00000445503	SLC9A3	P48764	834 aa		11.25	□□□□□ -0.61
MSH6-204	ENST00000445503	LIM2	P55344	173 aa		11.25	□□□□□ -0.61
MSH6-204	ENST00000445503	RPS25	P62851	125 aa	Known RBP	11.25	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 46 ms