RNA–Protein interactions for RNA: ENST00000439475.1

MCF2L-216, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-216ENST00000439475 OR10A5Q9H207 317 aa9.7□□□□□ -0.86
MCF2L-216ENST00000439475 C12orf65Q9H3J6 166 aaKnown RBP9.7□□□□□ -0.86
MCF2L-216ENST00000439475 CXorf21Q9HAI6 301 aa9.7□□□□□ -0.86
MCF2L-216ENST00000439475 BCAP29Q9UHQ4 241 aa9.7□□□□□ -0.86
MCF2L-216ENST00000439475 UTS2RQ9UKP6 389 aa9.7□□□□□ -0.86
MCF2L-216ENST00000439475 CES1P1Q9UKY3 287 aa9.7□□□□□ -0.86
MCF2L-216ENST00000439475 NPIPA1Q9UND3 350 aa9.7□□□□□ -0.86
MCF2L-216ENST00000439475 DLGAP4Q9Y2H0 992 aa9.7□□□□□ -0.86
MCF2L-216ENST00000439475 BAHCC1Q9P281 2608 aa9.7□□□□□ -0.86
MCF2L-216ENST00000439475 NBASA2RRP1 2371 aa9.7□□□□□ -0.86
MCF2L-216ENST00000439475 TRGV8A0A0C4DH27 118 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 TFECO14948 347 aaPredicted RBP9.69□□□□□ -0.86
MCF2L-216ENST00000439475 ASNA1O43681 348 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 SEC22BO75396 215 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 OR6B1O95007 311 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 FGF4P08620 206 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 IL3P08700 152 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 STSP08842 583 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 NEFHP12036 1026 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 ZNF24P17028 368 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 DDX5P17844 614 aaKnown RBP9.69□□□□□ -0.86
MCF2L-216ENST00000439475 MST1P26927 711 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 MPIP34949 423 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 FEN1P39748 380 aaKnown RBP9.69□□□□□ -0.86
MCF2L-216ENST00000439475 SOX3P41225 446 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 TMED10P49755 219 aaKnown RBP9.69□□□□□ -0.86
MCF2L-216ENST00000439475 FOXA1P55317 472 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 SLC37A1P57057 533 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 RPP38P78345 283 aaKnown RBP9.69□□□□□ -0.86
MCF2L-216ENST00000439475 PLGLB1Q02325 96 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 SRSF1Q07955 248 aaKnown RBP eCLIP9.69□□□□□ -0.86
MCF2L-216ENST00000439475 ZNF763Q0D2J5 394 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 FUT7Q11130 342 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 ZNF750Q32MQ0 723 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 CEP85LQ5SZL2 805 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 SLC22A10Q63ZE4 541 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 MTFR2Q6P444 385 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 C16orf47Q6ZP98 133 aaPredicted RBP9.69□□□□□ -0.86
MCF2L-216ENST00000439475 DGAT2L6Q6ZPD8 337 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 RGS9BPQ6ZS82 235 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 GK5Q6ZS86 529 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 MDGA2Q7Z553 956 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 ZNF227Q86WZ6 799 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 NUDCD3Q8IVD9 361 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 C9orf40Q8IXQ3 194 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 EID3Q8N140 333 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 GHDCQ8N2G8 530 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 LRRC25Q8N386 305 aaPredicted RBP9.69□□□□□ -0.86
MCF2L-216ENST00000439475 CPSF7Q8N684 471 aaKnown RBP9.69□□□□□ -0.86
MCF2L-216ENST00000439475 C16orf52Q8NHV5 167 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 DOK4Q8TEW6 326 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 STMN4Q9H169 189 aaPredicted RBP9.69□□□□□ -0.86
MCF2L-216ENST00000439475 CENPHQ9H3R5 247 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 MIEF1Q9NQG6 463 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 SACM1LQ9NTJ5 587 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 EHD3Q9NZN3 535 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 SUCOQ9UBS9 1254 aaKnown RBP9.69□□□□□ -0.86
MCF2L-216ENST00000439475 PRODH2Q9UF12 536 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 FIS1Q9Y3D6 152 aa9.69□□□□□ -0.86
MCF2L-216ENST00000439475 HRKO00198 91 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 TP53I11O14683 189 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 LRRTM2O43300 516 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 SEMA7AO75326 666 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 ATP1B1P05026 303 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 SSTR4P31391 388 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 NR0B1P51843 470 aaKnown RBP9.68□□□□□ -0.86
MCF2L-216ENST00000439475 KCNK10P57789 538 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 DCAF7P61962 342 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 RAE1P78406 368 aaKnown RBP9.68□□□□□ -0.86
MCF2L-216ENST00000439475 ZNF844Q08AG5 666 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 EBPQ15125 230 aaKnown RBP9.68□□□□□ -0.86
MCF2L-216ENST00000439475 PRICKLE4Q2TBC4 344 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 TBCELQ5QJ74 424 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 RNF165Q6ZSG1 346 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 FAM47EQ6ZV65 393 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 CCDC116Q8IYX3 515 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 VWA5B2Q8N398 1253 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 CDC26Q8NHZ8 85 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 EXOSC8Q96B26 276 aaKnown RBP9.68□□□□□ -0.86
MCF2L-216ENST00000439475 MAGED4Q96JG8 741 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 BBS4Q96RK4 519 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 CCT7Q99832 543 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 FAM173AQ9BQD7 235 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 EBPLQ9BY08 206 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 WWTR1Q9GZV5 400 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 SSU72Q9NP77 194 aaKnown RBP9.68□□□□□ -0.86
MCF2L-216ENST00000439475 SLC35C2Q9NQQ7 365 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 C1orf109Q9NX04 203 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 CNIH4Q9P003 139 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 SLC17A7Q9P2U7 560 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 ERRFI1Q9UJM3 462 aaPredicted RBP9.68□□□□□ -0.86
MCF2L-216ENST00000439475 TRAF6Q9Y4K3 522 aa9.68□□□□□ -0.86
MCF2L-216ENST00000439475 NPIPB8E9PQR5 432 aa9.67□□□□□ -0.86
MCF2L-216ENST00000439475 PRRG2O14669 202 aa9.67□□□□□ -0.86
MCF2L-216ENST00000439475 TM9SF1O15321 606 aa9.67□□□□□ -0.86
MCF2L-216ENST00000439475 TYROBPO43914 113 aa9.67□□□□□ -0.86
MCF2L-216ENST00000439475 SNUPNO95149 360 aaKnown RBP9.67□□□□□ -0.86
MCF2L-216ENST00000439475 BPGMP07738 259 aa9.67□□□□□ -0.86
MCF2L-216ENST00000439475 CT62P0C5K7 136 aa9.67□□□□□ -0.86
MCF2L-216ENST00000439475 ESRRAP11474 423 aaPredicted RBP9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms