RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 PRKAG1P54619 331 aa16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 DUSP2Q05923 314 aa16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 TRAP1Q12931 704 aaKnown RBP16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 KPNB1Q14974 876 aaKnown RBP16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 ERICH5Q6P6B1 374 aa16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 SERPINA11Q86U17 422 aa16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 DHFR2Q86XF0 187 aa16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 ADCY4Q8NFM4 1077 aa16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 JADE3Q92613 823 aa16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 NCLNQ969V3 563 aa16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 ANKRD9Q96BM1 317 aaPredicted RBP16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 NEURL3Q96EH8 262 aa16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 RBM18Q96H35 190 aaKnown RBP16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 PTCHD1Q96NR3 888 aa16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 ALOXE3Q9BYJ1 711 aa16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 ASPSCR1Q9BZE9 553 aa16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 IKZF5Q9H5V7 419 aa16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 DENND2DQ9H6A0 471 aaPredicted RBP16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 SIRT3Q9NTG7 399 aaPredicted RBP16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 MAGEL2Q9UJ55 1249 aa16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 SNX13Q9Y5W8 968 aa16.07■□□□□ 0.16
CCDC28B-202ENST00000421922 MYOCOSA0A1B0GUC4 107 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 A0A1W2PS29 197 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 ELOVL7A1L3X0 281 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 TMEM247A6NEH6 219 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 A8MUI8 341 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 C9J4A7 227 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 ATP1B1P05026 303 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 ITIH1P19827 911 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 HTR1EP28566 365 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 PTGER1P34995 402 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 SOX11P35716 441 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 MC3RP41968 323 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 PRIM2P49643 509 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 CLDN6P56747 220 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 RGNQ15493 299 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 LTB4RQ15722 352 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 GCNT6Q5T4J0 391 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 TMEM164Q5U3C3 297 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 SAXO2Q658L1 398 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 QSOX2Q6ZRP7 698 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 C6orf120Q7Z4R8 191 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 RNF130Q86XS8 419 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 ZC3H7AQ8IWR0 971 aaKnown RBP16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 PRSS58Q8IYP2 241 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 MICU2Q8IYU8 434 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 ST13P4Q8IZP2 240 aaPredicted RBP16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 HIPK4Q8NE63 616 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 WDR36Q8NI36 951 aaKnown RBP16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 KAT2AQ92830 837 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 REXO5Q96IC2 774 aaKnown RBP16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 RSRC1Q96IZ7 334 aaKnown RBP16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 TAAR9Q96RI9 348 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 PTGFRNQ9P2B2 879 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 EGFL7Q9UHF1 273 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 SEC16AO15027 2179 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 FER1L5A0AVI2 2057 aa16.06■□□□□ 0.16
CCDC28B-202ENST00000421922 PLD2O14939 933 aa16.05■□□□□ 0.16
CCDC28B-202ENST00000421922 JRKO75564 520 aa16.05■□□□□ 0.16
CCDC28B-202ENST00000421922 GPX2P18283 190 aa16.05■□□□□ 0.16
CCDC28B-202ENST00000421922 TNNI3P19429 210 aa16.05■□□□□ 0.16
CCDC28B-202ENST00000421922 MAOAP21397 527 aa16.05■□□□□ 0.16
CCDC28B-202ENST00000421922 KHKP50053 298 aa16.05■□□□□ 0.16
CCDC28B-202ENST00000421922 BTG2P78543 158 aa16.05■□□□□ 0.16
CCDC28B-202ENST00000421922 SLCO6A1Q86UG4 719 aa16.05■□□□□ 0.16
CCDC28B-202ENST00000421922 PROSER1Q86XN7 944 aa16.05■□□□□ 0.16
CCDC28B-202ENST00000421922 GALNT12Q8IXK2 581 aa16.05■□□□□ 0.16
CCDC28B-202ENST00000421922 NUP43Q8NFH3 380 aa16.05■□□□□ 0.16
CCDC28B-202ENST00000421922 BHLHE22Q8NFJ8 381 aaPredicted RBP16.05■□□□□ 0.16
CCDC28B-202ENST00000421922 WDR60Q8WVS4 1066 aa16.05■□□□□ 0.16
CCDC28B-202ENST00000421922 MR1Q95460 341 aa16.05■□□□□ 0.16
CCDC28B-202ENST00000421922 ELP4Q96EB1 424 aa16.05■□□□□ 0.16
CCDC28B-202ENST00000421922 ZNF583Q96ND8 569 aa16.05■□□□□ 0.16
CCDC28B-202ENST00000421922 MS4A4EQ96PG1 132 aa16.05■□□□□ 0.16
CCDC28B-202ENST00000421922 DDA1Q9BW61 102 aa16.05■□□□□ 0.16
CCDC28B-202ENST00000421922 PCDHAC1Q9H158 963 aa16.05■□□□□ 0.16
CCDC28B-202ENST00000421922 LANCL2Q9NS86 450 aa16.05■□□□□ 0.16
CCDC28B-202ENST00000421922 FAF1Q9UNN5 650 aaPredicted RBP16.05■□□□□ 0.16
CCDC28B-202ENST00000421922 ERVK-11Q9UQG0 969 aa16.05■□□□□ 0.16
CCDC28B-202ENST00000421922 GMEB1Q9Y692 573 aa16.05■□□□□ 0.16
CCDC28B-202ENST00000421922 KMT2BQ9UMN6 2715 aaPredicted RBP16.05■□□□□ 0.16
CCDC28B-202ENST00000421922 MEN1O00255 615 aa16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 BCAS2O75934 225 aaPredicted RBP16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 HEXBP07686 556 aa16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 MAGEA8P43361 318 aa16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 STT3AP46977 705 aa16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 NOVA1P51513 510 aaKnown RBP16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 OR4D2P58180 307 aa16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 DSTNP60981 165 aa16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 ACTR3P61158 418 aa16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 GLIPR1L2Q4G1C9 344 aa16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 VWA2Q5GFL6 755 aa16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 C3orf38Q5JPI3 329 aa16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 MLIPQ5VWP3 458 aa16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 CPZQ66K79 652 aa16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 COX15Q7KZN9 410 aa16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 SPATA24Q86W54 205 aa16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 SLC38A9Q8NBW4 561 aa16.04■□□□□ 0.16
CCDC28B-202ENST00000421922 STT3BQ8TCJ2 826 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms