RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 NAXEQ8NCW5 288 aa11.91□□□□□ -0.5
LINC00339-202ENST00000416769 TRPV3Q8NET8 790 aa11.91□□□□□ -0.5
LINC00339-202ENST00000416769 GAL3ST3Q96A11 431 aa11.91□□□□□ -0.5
LINC00339-202ENST00000416769 ESAMQ96AP7 390 aa11.91□□□□□ -0.5
LINC00339-202ENST00000416769 L3HYPDHQ96EM0 354 aa11.91□□□□□ -0.5
LINC00339-202ENST00000416769 FOXC2Q99958 501 aa11.91□□□□□ -0.5
LINC00339-202ENST00000416769 TMEM79Q9BSE2 394 aa11.91□□□□□ -0.5
LINC00339-202ENST00000416769 CAPS2Q9BXY5 557 aa11.91□□□□□ -0.5
LINC00339-202ENST00000416769 ADAP2Q9NPF8 381 aa11.91□□□□□ -0.5
LINC00339-202ENST00000416769 ST6GALNAC2Q9UJ37 374 aa11.91□□□□□ -0.5
LINC00339-202ENST00000416769 K7EPI3 171 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 RTCAO00442 366 aaKnown RBP11.9□□□□□ -0.5
LINC00339-202ENST00000416769 CDK2AP1O14519 115 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 WDR47O94967 919 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 ETHE1O95571 254 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 IFNA16P05015 189 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 CHN1P15882 459 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 CD22P20273 847 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 ZFP36L2P47974 494 aaKnown RBP11.9□□□□□ -0.5
LINC00339-202ENST00000416769 HERVK_113P63132 956 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 SKP1P63208 163 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 TERF2Q15554 542 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 UNC50Q53HI1 259 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 C1orf185Q5T7R7 199 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 PRAMEF20Q5VT98 475 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 ARSKQ6UWY0 536 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 ZNF793Q6ZN11 406 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 LRRC70Q7Z2Q7 622 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 UBE3DQ7Z6J8 389 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 FAM109AQ8N4B1 249 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 TBC1D19Q8N5T2 526 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 PAIP2Q9BPZ3 127 aaKnown RBP11.9□□□□□ -0.5
LINC00339-202ENST00000416769 ERVK-6Q9BXR3 956 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 SLC6A15Q9H2J7 730 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 DNAJC11Q9NVH1 559 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 FAM53CQ9NYF3 392 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 GPRC5BQ9NZH0 403 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 RPH3AQ9Y2J0 694 aaPredicted RBP11.9□□□□□ -0.5
LINC00339-202ENST00000416769 ATG4BQ9Y4P1 393 aa11.9□□□□□ -0.5
LINC00339-202ENST00000416769 VPS13CQ709C8 3753 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 A0A1B0GVC2 190 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 LRRC3CA6NJW4 275 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 ACOT7O00154 380 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 CLDN4O14493 209 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 CCNT2O60583 730 aaKnown RBP11.89□□□□□ -0.51
LINC00339-202ENST00000416769 SUPT7LO94864 414 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 SIX3O95343 332 aaPredicted RBP11.89□□□□□ -0.51
LINC00339-202ENST00000416769 RPS17P08708 135 aaKnown RBP11.89□□□□□ -0.51
LINC00339-202ENST00000416769 C1GALT1C1LP0DN25 315 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 CNR1P21554 472 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 PIK3CGP48736 1102 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 HSD17B7P56937 341 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 RNF4P78317 190 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 FOLH1Q04609 750 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 PCDH1Q08174 1060 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 ELAVL1Q15717 326 aaKnown RBP11.89□□□□□ -0.51
LINC00339-202ENST00000416769 LYPD8Q6UX82 237 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 HSDL2Q6YN16 418 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 RTL4Q6ZR62 310 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 FAM47EQ6ZV65 393 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 SLC22A16Q86VW1 577 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 CDC20BQ86Y33 519 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 TRIM42Q8IWZ5 723 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 OR4N5Q8IXE1 308 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 CLYBLQ8N0X4 340 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 WFDC11Q8NEX6 87 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 OR6Y1Q8NGX8 325 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 SLC2A12Q8TD20 617 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 MGARPQ8TDB4 240 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 FAR2Q96K12 515 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 F2RL3Q96RI0 385 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 MAPKAP1Q9BPZ7 522 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 FAM173AQ9BQD7 235 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 MECRQ9BV79 373 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 GATA5Q9BWX5 397 aaPredicted RBP11.89□□□□□ -0.51
LINC00339-202ENST00000416769 SORBS1Q9BX66 1292 aaKnown RBP11.89□□□□□ -0.51
LINC00339-202ENST00000416769 ALOXE3Q9BYJ1 711 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 CLEC4MQ9H2X3 399 aaPredicted RBP11.89□□□□□ -0.51
LINC00339-202ENST00000416769 IL1RL2Q9HB29 575 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 PROK2Q9HC23 129 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 DMRT3Q9NQL9 472 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 INTS9Q9NV88 658 aaKnown RBP11.89□□□□□ -0.51
LINC00339-202ENST00000416769 OPTCQ9UBM4 332 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 ACAD8Q9UKU7 415 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 ZNF490Q9ULM2 529 aaPredicted RBP11.89□□□□□ -0.51
LINC00339-202ENST00000416769 DAPP1Q9UN19 280 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 KCNE2Q9Y6J6 123 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 JMJD1CQ15652 2540 aa11.89□□□□□ -0.51
LINC00339-202ENST00000416769 WDR91A4D1P6 747 aa11.88□□□□□ -0.51
LINC00339-202ENST00000416769 URADA6NGE7 173 aa11.88□□□□□ -0.51
LINC00339-202ENST00000416769 LRRC14BA6NHZ5 514 aa11.88□□□□□ -0.51
LINC00339-202ENST00000416769 FIGNL2A6NMB9 653 aa11.88□□□□□ -0.51
LINC00339-202ENST00000416769 C17orf105B2RV13 164 aa11.88□□□□□ -0.51
LINC00339-202ENST00000416769 AQP7O14520 342 aa11.88□□□□□ -0.51
LINC00339-202ENST00000416769 BCKDKO14874 412 aa11.88□□□□□ -0.51
LINC00339-202ENST00000416769 CLGNO14967 610 aa11.88□□□□□ -0.51
LINC00339-202ENST00000416769 B3GALT2O43825 422 aa11.88□□□□□ -0.51
LINC00339-202ENST00000416769 NPHS1O60500 1241 aa11.88□□□□□ -0.51
LINC00339-202ENST00000416769 H2AFYO75367 372 aaKnown RBP11.88□□□□□ -0.51
LINC00339-202ENST00000416769 PRKRAO75569 313 aaKnown RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms