RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 WDR1O75083 606 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 TRAPPC6AO75865 159 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 KLHL2O95198 593 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 ZWINTO95229 277 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 KLK1P06870 262 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 SERPINB3P29508 390 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 TYK2P29597 1187 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 RIPPLY3P57055 190 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 PHEXP78562 749 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 NAB1Q13506 487 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 ACAP2Q15057 778 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 PCBP2Q15366 365 aaKnown RBP eCLIP10.62□□□□□ -0.71
USP4-204ENST00000416417 SPRED3Q2MJR0 410 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 TECRLQ5HYJ1 363 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 CES4AQ5XG92 561 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 FAM180BQ6P0A1 224 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 CLYBLQ8N0X4 340 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 LIX1Q8N485 282 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 SLC15A4Q8N697 577 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 ZNF441Q8N8Z8 693 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 L3MBTL4Q8NA19 623 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 NAXEQ8NCW5 288 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 SIMC1Q8NDZ2 872 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 TNIP2Q8NFZ5 429 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 UHMK1Q8TAS1 419 aaKnown RBP10.62□□□□□ -0.71
USP4-204ENST00000416417 NEIL3Q8TAT5 605 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 ATP6V1E2Q96A05 226 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 GNRHR2Q96P88 292 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 LRRC1Q9BTT6 524 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 CXorf21Q9HAI6 301 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 FARSBQ9NSD9 589 aaKnown RBP10.62□□□□□ -0.71
USP4-204ENST00000416417 ZDHHC18Q9NUE0 388 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 NINJ2Q9NZG7 142 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 KCNN3Q9UGI6 736 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 DTX4Q9Y2E6 619 aa10.62□□□□□ -0.71
USP4-204ENST00000416417 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.62□□□□□ -0.71
USP4-204ENST00000416417 DNAJC13O75165 2243 aa10.61□□□□□ -0.71
USP4-204ENST00000416417 PPP6CO00743 305 aa10.61□□□□□ -0.71
USP4-204ENST00000416417 TRIM3O75382 744 aaPredicted RBP10.61□□□□□ -0.71
USP4-204ENST00000416417 SLC35E2P0CK97 266 aa10.61□□□□□ -0.71
USP4-204ENST00000416417 NT5EP21589 574 aa10.61□□□□□ -0.71
USP4-204ENST00000416417 PIK3R1P27986 724 aa10.61□□□□□ -0.71
USP4-204ENST00000416417 DNAJA1P31689 397 aaKnown RBP10.61□□□□□ -0.71
USP4-204ENST00000416417 UQCRC1P31930 480 aa10.61□□□□□ -0.71
USP4-204ENST00000416417 SERPINB8P50452 374 aa10.61□□□□□ -0.71
USP4-204ENST00000416417 AGFG1P52594 562 aaKnown RBP10.61□□□□□ -0.71
USP4-204ENST00000416417 DUSP8Q13202 625 aa10.61□□□□□ -0.71
USP4-204ENST00000416417 CUL3Q13618 768 aa10.61□□□□□ -0.71
USP4-204ENST00000416417 NTRK2Q16620 822 aa10.61□□□□□ -0.71
USP4-204ENST00000416417 TTC19Q6DKK2 380 aaPredicted RBP10.61□□□□□ -0.71
USP4-204ENST00000416417 FAM111BQ6SJ93 734 aa10.61□□□□□ -0.71
USP4-204ENST00000416417 ARSKQ6UWY0 536 aa10.61□□□□□ -0.71
USP4-204ENST00000416417 SPNS3Q6ZMD2 512 aa10.61□□□□□ -0.71
USP4-204ENST00000416417 NUDT13Q86X67 352 aa10.61□□□□□ -0.71
USP4-204ENST00000416417 ZNF615Q8N8J6 731 aa10.61□□□□□ -0.71
USP4-204ENST00000416417 RELL2Q8NC24 303 aaPredicted RBP10.61□□□□□ -0.71
USP4-204ENST00000416417 REPS1Q96D71 796 aa10.61□□□□□ -0.71
USP4-204ENST00000416417 ZNF597Q96LX8 424 aa10.61□□□□□ -0.71
USP4-204ENST00000416417 RILPQ96NA2 401 aa10.61□□□□□ -0.71
USP4-204ENST00000416417 GPATCH1Q9BRR8 931 aaKnown RBP10.61□□□□□ -0.71
USP4-204ENST00000416417 WDR41Q9HAD4 459 aa10.61□□□□□ -0.71
USP4-204ENST00000416417 ZBTB26Q9HCK0 441 aa10.61□□□□□ -0.71
USP4-204ENST00000416417 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.61□□□□□ -0.71
USP4-204ENST00000416417 DNAJB12Q9NXW2 375 aaKnown RBP10.61□□□□□ -0.71
USP4-204ENST00000416417 CNIH4Q9P003 139 aa10.61□□□□□ -0.71
USP4-204ENST00000416417 TSC22D4Q9Y3Q8 395 aa10.61□□□□□ -0.71
USP4-204ENST00000416417 NPFFR2Q9Y5X5 522 aa10.61□□□□□ -0.71
USP4-204ENST00000416417 INTS1Q8N201 2190 aaKnown RBP10.61□□□□□ -0.71
USP4-204ENST00000416417 FOXE1O00358 373 aaPredicted RBP10.6□□□□□ -0.71
USP4-204ENST00000416417 GNB5O14775 395 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 NME6O75414 186 aaPredicted RBP10.6□□□□□ -0.71
USP4-204ENST00000416417 CLDN9O95484 217 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 BMP5P22003 454 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 XKP51811 444 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 CCNG1P51959 295 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 IST1P53990 364 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 DUSP2Q05923 314 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 EXOSC7Q15024 291 aaKnown RBP10.6□□□□□ -0.71
USP4-204ENST00000416417 TOMM20Q15388 145 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 EIPR1Q53HC9 387 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 WIPI1Q5MNZ9 446 aaPredicted RBP10.6□□□□□ -0.71
USP4-204ENST00000416417 DCST1Q5T197 706 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 RIPPLY2Q5TAB7 128 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 FNDC7Q5VTL7 733 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 HLA-DQA1Q5Y7H0 255 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 TMEM198Q66K66 360 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 OR52E8Q6IFG1 317 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 KLC3Q6P597 504 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 PLXDC2Q6UX71 529 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 GALNT12Q8IXK2 581 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 TAGAPQ8N103 731 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 SPPL2AQ8TCT8 520 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 HBEGFQ99075 208 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 TIMP4Q99727 224 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 PELOQ9BRX2 385 aaKnown RBP10.6□□□□□ -0.71
USP4-204ENST00000416417 OR10A5Q9H207 317 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 CCM2LQ9NUG4 571 aaPredicted RBP10.6□□□□□ -0.71
USP4-204ENST00000416417 EHD3Q9NZN3 535 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 CRIM1Q9NZV1 1036 aa10.6□□□□□ -0.71
USP4-204ENST00000416417 XPR1Q9UBH6 696 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms