RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 SPTSSAQ969W0 71 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 ELMOD3Q96FG2 381 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 ZFR2Q9UPR6 939 aaKnown RBP12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 CBSLP0DN79 551 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 CBSP35520 551 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 NDST2P52849 883 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 FBXL20Q96IG2 436 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 ACO2Q99798 780 aaKnown RBP12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 DCAF16Q9NXF7 216 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 MRPL15Q9P015 296 aaKnown RBP12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 FETUBQ9UGM5 382 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 GOLT1BQ9Y3E0 138 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 LOC102723532A0A0G2JNH3 316 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 CD300LBA8K4G0 201 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 FCER1GP30273 86 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 SLAMF1Q13291 335 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 FRG2Q64ET8 278 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 DPY19L2P1Q6NXN4 242 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 FRG2BQ96QU4 278 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 P2RY13Q9BPV8 354 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 PATZ1Q9HBE1 687 aaKnown RBP12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 ACSL6Q9UKU0 697 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 KIAA0513O60268 411 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 UGT3A2Q3SY77 523 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 RNF170Q96K19 258 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 CACNG6Q9BXT2 260 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 RPH3ALQ9UNE2 315 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 C17orf112F2Z3M2 114 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 PDHXO00330 501 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 PTBP3O95758 552 aaKnown RBP12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 ZNF8P17098 575 aaPredicted RBP12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 NDUFV2P19404 249 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 HK3P52790 923 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 PLPP4Q5VZY2 271 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 CHDHQ8NE62 594 aaPredicted RBP12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 CASD1Q96PB1 797 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 TPPP3Q9BW30 176 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 HMX1Q9NP08 348 aaPredicted RBP12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 FRMPD1Q5SYB0 1578 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 RNF212BA8MTL3 300 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 TERTO14746 1132 aaKnown RBP12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 CCL16O15467 120 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 MED6O75586 246 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 DFFBO76075 338 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 TNFP01375 233 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 LGALS2P05162 132 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 FMO1Q01740 532 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 VITQ6UXI7 678 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 PRR18Q8N4B5 295 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 SFXN5Q8TD22 340 aa12.8□□□□□ -0.36
CCDC88A-204ENST00000413716 E9PCH4 1651 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 CNTNAP1P78357 1384 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 GPR137BO60478 399 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 EIF4EP06730 217 aaKnown RBP12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 GJA5P36382 358 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 TAS2R40P59535 323 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 GRIN2CQ14957 1233 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 ARL6IP1Q15041 203 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 LANCL3Q6ZV70 420 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 VWA5B2Q8N398 1253 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 OR2T35Q8NGX2 323 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 NANOS1Q8WY41 292 aaKnown RBP12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 OR2AG1Q9H205 316 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 FAM120CQ9NX05 1096 aaKnown RBP12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 DLG5Q8TDM6 1919 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 ZNF736B4DX44 427 aaPredicted RBP12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 SMIM10L2AP0DMW4 78 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 SMIM10L2BP0DMW5 78 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 TNFSF4P23510 183 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 CPT2P23786 658 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 ELK4P28324 431 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 NKX2-5P52952 324 aaPredicted RBP12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 ZNF92Q03936 586 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 GJE1A6NN92 205 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 TGFB1P01137 390 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 RHOQP17081 205 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 NXPE4Q6UWF7 544 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 GPR155Q7Z3F1 870 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 ESPL1Q14674 2120 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 KDM6BO15054 1643 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 PRRT1Q99946 306 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 GPN2Q9H9Y4 310 aaPredicted RBP12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 ARID1AO14497 2285 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 RASAL1O95294 804 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 VIPR1P32241 457 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 BEX3Q00994 111 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 DSC2Q02487 901 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 GUK1Q16774 197 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 KIAA1211LQ6NV74 962 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 PRR22Q8IZ63 422 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 GAB3Q8WWW8 586 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 GAS2L1Q99501 681 aaPredicted RBP12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 ARHGEF17Q96PE2 2063 aaPredicted RBP12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 MAT2AP31153 395 aaKnown RBP12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 GABARAPL2P60520 117 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 KCNC4Q03721 635 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 STEAP3Q658P3 488 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 LSMEM2Q8N112 164 aa12.79□□□□□ -0.36
CCDC88A-204ENST00000413716 OR4K15Q8NH41 348 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms