RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 LCE5AQ5TCM9 118 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 KCTD11Q693B1 232 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 AAGABQ6PD74 315 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 WDR74Q6RFH5 385 aaPredicted RBP6.03□□□□□ -1.44
USP40-202ENST00000409945 AFTPHQ6ULP2 937 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 SDCCAG8Q86SQ7 713 aaPredicted RBP6.03□□□□□ -1.44
USP40-202ENST00000409945 C17orf82Q86X59 251 aaPredicted RBP6.03□□□□□ -1.44
USP40-202ENST00000409945 KLHDC8BQ8IXV7 354 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 OR52K1Q8NGK4 314 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 OR13C4Q8NGS5 318 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 HM13Q8TCT9 377 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 KCNE4Q8WWG9 221 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 DNAJC1Q96KC8 554 aaKnown RBP6.03□□□□□ -1.44
USP40-202ENST00000409945 RANBP9Q96S59 729 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 LOXL2Q9Y4K0 774 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 IGF2RP11717 2491 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 ANKRD11Q6UB99 2663 aaPredicted RBP6.03□□□□□ -1.44
USP40-202ENST00000409945 ACACAQ13085 2346 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 MYLKQ15746 1914 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 IGHV1OR21-1A0A087WYE8 117 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 A0A1W2PRQ8 180 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 MAGEB16A2A368 324 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 HSPB2A8KAH6 182 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 NPIPB11E5RHQ5 1161 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 LDB2O43679 373 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 KRT14P02533 472 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 RPN2P04844 631 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 TNFSF8P32971 234 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 TTKP33981 857 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 TTPAP49638 278 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 CLK1P49759 484 aaKnown RBP6.03□□□□□ -1.44
USP40-202ENST00000409945 LIMK2P53671 638 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 ELLP55199 621 aaPredicted RBP6.03□□□□□ -1.44
USP40-202ENST00000409945 PRKAA1Q13131 559 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 RPA4Q13156 261 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 HSPB2Q16082 182 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 BCL7AQ4VC05 210 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 CHCHD2P9Q5T1J5 151 aaPredicted RBP6.03□□□□□ -1.44
USP40-202ENST00000409945 TMEM268Q5VZI3 342 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 KCTD16Q68DU8 428 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 CASC4Q6P4E1 433 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 CCDC137Q6PK04 289 aaKnown RBP6.03□□□□□ -1.44
USP40-202ENST00000409945 ABRAXAS1Q6UWZ7 409 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 ZNF793Q6ZN11 406 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 IKBIPQ70UQ0 350 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 DET1Q7L5Y6 550 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 SLC46A3Q7Z3Q1 461 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 HOOK3Q86VS8 718 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 SERPINA9Q86WD7 417 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 MARCH9Q86YJ5 346 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 HORMAD2Q8N7B1 307 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 TMEM116Q8NCL8 245 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 OR2L2Q8NH16 312 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 ACTRT1Q8TDG2 376 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 PATE1Q8WXA2 126 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 SGF29Q96ES7 293 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 CDKN2AIPNLQ96HQ2 116 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 TEFMQ96QE5 360 aaKnown RBP6.03□□□□□ -1.44
USP40-202ENST00000409945 ZPBPQ9BS86 351 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 B3GNT4Q9C0J1 378 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 TMPRSS5Q9H3S3 457 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 RDH14Q9HBH5 336 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 XAB2Q9HCS7 855 aaKnown RBP6.03□□□□□ -1.44
USP40-202ENST00000409945 MED4Q9NPJ6 270 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 SMARCAL1Q9NZC9 954 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 PISDQ9UG56 409 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 TTC7AQ9ULT0 858 aaPredicted RBP6.03□□□□□ -1.44
USP40-202ENST00000409945 COX11Q9Y6N1 276 aa6.03□□□□□ -1.44
USP40-202ENST00000409945 ZFC3H1O60293 1989 aaKnown RBP6.02□□□□□ -1.44
USP40-202ENST00000409945 AKAP13Q12802 2813 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 UNC13CQ8NB66 2214 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 PLXNB3Q9ULL4 1909 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 CACNA1BQ00975 2339 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 RP1P56715 2156 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 EIF4E1BA6NMX2 242 aaKnown RBP6.02□□□□□ -1.45
USP40-202ENST00000409945 TOX3O15405 576 aaPredicted RBP6.02□□□□□ -1.45
USP40-202ENST00000409945 B4GAT1O43505 415 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 HEXAP06865 529 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 TPSB2P20231 275 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 TNFRSF8P28908 595 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 CD1CP29017 333 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 RYKP34925 604 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 RPL22P35268 128 aaKnown RBP6.02□□□□□ -1.45
USP40-202ENST00000409945 EIF2S3P41091 472 aaKnown RBP6.02□□□□□ -1.45
USP40-202ENST00000409945 FNTAP49354 379 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 PRLHRP49683 370 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 HSF1Q00613 529 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 ZFP36L1Q07352 338 aaKnown RBP6.02□□□□□ -1.45
USP40-202ENST00000409945 C2orf54Q08AI8 447 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 CASP8Q14790 479 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 TMED2Q15363 201 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 TPSAB1Q15661 275 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 HSP90B2PQ58FF3 399 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 FAM182AQ5T1J6 154 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 DCAF12Q5T6F0 453 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 C8orf74Q6P047 294 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 TTC23LQ6PF05 361 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 TMEM26Q6ZUK4 368 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 LURAP1LQ8IV03 231 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 CFAP206Q8IYR0 622 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms