RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 TNIP2Q8NFZ5 429 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 OR56A1Q8NGH5 318 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 GOT1L1Q8NHS2 421 aaPredicted RBP13.33□□□□□ -0.28
SKA1-202ENST00000398452 STT3BQ8TCJ2 826 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 UCN3Q969E3 161 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 MAGED4Q96JG8 741 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 ANKRD27Q96NW4 1050 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 CDRT15Q96T59 188 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 TGIF2Q9GZN2 237 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 PAIP1Q9H074 479 aaKnown RBP13.33□□□□□ -0.28
SKA1-202ENST00000398452 SERHLQ9NQF3 203 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 DDX18Q9NVP1 670 aaKnown RBP13.33□□□□□ -0.28
SKA1-202ENST00000398452 C19orf25Q9UFG5 118 aaPredicted RBP13.33□□□□□ -0.28
SKA1-202ENST00000398452 PCDHB14Q9Y5E9 798 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 FAM208BQ5VWN6 2430 aa13.33□□□□□ -0.28
SKA1-202ENST00000398452 ZFYVE26Q68DK2 2539 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 FAM149AA5PLN7 773 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 TMEM247A6NEH6 219 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 WASHC1A8K0Z3 465 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 H0YHG0 523 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 CLIC1O00299 241 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 EMC8O43402 210 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 ONECUT2O95948 504 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 CYC1P08574 325 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 ZNF28P17035 718 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 CD82P27701 267 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 STT3AP46977 705 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 CCT3P49368 545 aaKnown RBP13.32□□□□□ -0.28
SKA1-202ENST00000398452 RPS15P62841 145 aaKnown RBP13.32□□□□□ -0.28
SKA1-202ENST00000398452 BTG2P78543 158 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 NSDHLQ15738 373 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 MPEG1Q2M385 716 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 SPRED3Q2MJR0 410 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 SPATS1Q496A3 300 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 RUNDC3AQ59EK9 446 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 NANOGP8Q6NSW7 305 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 DLEU7Q6UYE1 221 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 TMEM64Q6YI46 380 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 MED25Q71SY5 747 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 TMPRSS7Q7RTY8 843 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 GALNT12Q8IXK2 581 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 TMEM52Q8NDY8 209 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 OR9A2Q8NGT5 310 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 SFXN5Q8TD22 340 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 RIT1Q92963 219 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 ANKRD9Q96BM1 317 aaPredicted RBP13.32□□□□□ -0.28
SKA1-202ENST00000398452 FAM120BQ96EK7 910 aaKnown RBP13.32□□□□□ -0.28
SKA1-202ENST00000398452 ART5Q96L15 291 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 SLC39A3Q9BRY0 314 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 CRB3Q9BUF7 120 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 CHST8Q9H2A9 424 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 SOX17Q9H6I2 414 aaPredicted RBP13.32□□□□□ -0.28
SKA1-202ENST00000398452 WDR54Q9H977 334 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 NANOGQ9H9S0 305 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 TPT1P8Q9HAU6 139 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 ZCCHC3Q9NUD5 404 aaKnown RBP13.32□□□□□ -0.28
SKA1-202ENST00000398452 SLAMF8Q9P0V8 285 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 CTSFQ9UBX1 484 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 BCAP29Q9UHQ4 241 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 PCDHGA7Q9Y5G6 932 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 ADAMTS20P59510 1910 aa13.32□□□□□ -0.28
SKA1-202ENST00000398452 ACACAQ13085 2346 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 IGLV3-12A0A075B6K2 115 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 COQ9O75208 318 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 JRKO75564 520 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 BCAS2O75934 225 aaPredicted RBP13.31□□□□□ -0.28
SKA1-202ENST00000398452 ATP1B1P05026 303 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 MAOAP21397 527 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 SLC6A2P23975 617 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 SLC5A2P31639 672 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 CPOXP36551 454 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 CDKN2CP42773 168 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 PRKAG1P54619 331 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 EMP2P54851 167 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 EEFSECP57772 596 aaKnown RBP13.31□□□□□ -0.28
SKA1-202ENST00000398452 MTPNP58546 118 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 NKG7Q16617 165 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 CYP51A1Q16850 503 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 PRSS53Q2L4Q9 553 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 ZNF750Q32MQ0 723 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 C19orf48Q6RUI8 117 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 TMEM107Q6UX40 140 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 COX15Q7KZN9 410 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 ASRGL1Q7L266 308 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 SCUBE1Q8IWY4 988 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 NLGN4XQ8N0W4 816 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 PLPP5Q8NEB5 264 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 NLGN4YQ8NFZ3 816 aaPredicted RBP13.31□□□□□ -0.28
SKA1-202ENST00000398452 OR5AK3PQ8NH89 298 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 FBXO27Q8NI29 283 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 VPS50Q96JG6 964 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 ZNF681Q96N22 645 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 ZNF578Q96N58 590 aaPredicted RBP13.31□□□□□ -0.28
SKA1-202ENST00000398452 CADM1Q9BY67 442 aaKnown RBP13.31□□□□□ -0.28
SKA1-202ENST00000398452 SLC26A1Q9H2B4 701 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 CXorf36Q9H7Y0 433 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 SLAMF7Q9NQ25 335 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 PNO1Q9NRX1 252 aaKnown RBP13.31□□□□□ -0.28
SKA1-202ENST00000398452 LANCL2Q9NS86 450 aa13.31□□□□□ -0.28
SKA1-202ENST00000398452 VAPAQ9P0L0 249 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms