RNA–Protein interactions for RNA: ENST00000397109.7

SEC13-208, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best) BASIC

Gene SEC13, Length 1,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-208ENST00000397109 SLC2A12Q8TD20 617 aa13.55□□□□□ -0.24
SEC13-208ENST00000397109 THAP3Q8WTV1 239 aaPredicted RBP13.55□□□□□ -0.24
SEC13-208ENST00000397109 ERP27Q96DN0 273 aa13.55□□□□□ -0.24
SEC13-208ENST00000397109 SORT1Q99523 831 aa13.55□□□□□ -0.24
SEC13-208ENST00000397109 OR8D2Q9GZM6 311 aa13.55□□□□□ -0.24
SEC13-208ENST00000397109 C20orf27Q9GZN8 174 aa13.55□□□□□ -0.24
SEC13-208ENST00000397109 MYLK2Q9H1R3 596 aa13.55□□□□□ -0.24
SEC13-208ENST00000397109 RASSF4Q9H2L5 321 aa13.55□□□□□ -0.24
SEC13-208ENST00000397109 KLHL1Q9NR64 748 aa13.55□□□□□ -0.24
SEC13-208ENST00000397109 COPS7AQ9UBW8 275 aa13.55□□□□□ -0.24
SEC13-208ENST00000397109 A0A1B0GTL3 188 aa13.54□□□□□ -0.24
SEC13-208ENST00000397109 A0A1W2PR48 441 aa13.54□□□□□ -0.24
SEC13-208ENST00000397109 H0YHG0 523 aa13.54□□□□□ -0.24
SEC13-208ENST00000397109 UBFD1O14562 309 aaKnown RBP13.54□□□□□ -0.24
SEC13-208ENST00000397109 ITGA10O75578 1167 aa13.54□□□□□ -0.24
SEC13-208ENST00000397109 SLC25A12O75746 678 aa13.54□□□□□ -0.24
SEC13-208ENST00000397109 ESRRBO95718 433 aa13.54□□□□□ -0.24
SEC13-208ENST00000397109 HSPA4LO95757 839 aa13.54□□□□□ -0.24
SEC13-208ENST00000397109 DDAH2O95865 285 aa13.54□□□□□ -0.24
SEC13-208ENST00000397109 PDYNP01213 254 aa13.54□□□□□ -0.24
SEC13-208ENST00000397109 ENO1P06733 434 aaKnown RBP13.54□□□□□ -0.24
SEC13-208ENST00000397109 KLK1P06870 262 aa13.54□□□□□ -0.24
SEC13-208ENST00000397109 HMOX2P30519 316 aa13.54□□□□□ -0.24
SEC13-208ENST00000397109 SSR4P51571 173 aa13.54□□□□□ -0.24
SEC13-208ENST00000397109 CCNYL2Q5T2Q4 361 aa13.54□□□□□ -0.24
SEC13-208ENST00000397109 ZNF468Q5VIY5 522 aaPredicted RBP13.54□□□□□ -0.24
SEC13-208ENST00000397109 CES4AQ5XG92 561 aa13.54□□□□□ -0.24
SEC13-208ENST00000397109 OR52E8Q6IFG1 317 aa13.54□□□□□ -0.24
SEC13-208ENST00000397109 ZCCHC23Q6ZST2 131 aa13.54□□□□□ -0.24
SEC13-208ENST00000397109 MTDHQ86UE4 582 aaKnown RBP13.54□□□□□ -0.24
SEC13-208ENST00000397109 HOMEZQ8IX15 550 aa13.54□□□□□ -0.24
SEC13-208ENST00000397109 OR4N5Q8IXE1 308 aa13.54□□□□□ -0.24
SEC13-208ENST00000397109 GPALPP1Q8IXQ4 340 aa13.54□□□□□ -0.24
SEC13-208ENST00000397109 ST13P4Q8IZP2 240 aaPredicted RBP13.54□□□□□ -0.24
SEC13-208ENST00000397109 CDYL2Q8N8U2 506 aa13.54□□□□□ -0.24
SEC13-208ENST00000397109 AGAP11Q8TF27 550 aa13.54□□□□□ -0.24
SEC13-208ENST00000397109 MRPL1Q9BYD6 325 aaKnown RBP13.54□□□□□ -0.24
SEC13-208ENST00000397109 EML4Q9HC35 981 aaKnown RBP13.54□□□□□ -0.24
SEC13-208ENST00000397109 FARSBQ9NSD9 589 aaKnown RBP13.54□□□□□ -0.24
SEC13-208ENST00000397109 VPS29Q9UBQ0 182 aa13.54□□□□□ -0.24
SEC13-208ENST00000397109 CAPN7Q9Y6W3 813 aa13.54□□□□□ -0.24
SEC13-208ENST00000397109 SPTAN1Q13813 2472 aaKnown RBP13.53□□□□□ -0.24
SEC13-208ENST00000397109 MANBAO00462 879 aa13.53□□□□□ -0.24
SEC13-208ENST00000397109 ITM2AO43736 263 aa13.53□□□□□ -0.24
SEC13-208ENST00000397109 OR10H2O60403 315 aa13.53□□□□□ -0.24
SEC13-208ENST00000397109 ULK1O75385 1050 aa13.53□□□□□ -0.24
SEC13-208ENST00000397109 AIFM1O95831 613 aa13.53□□□□□ -0.24
SEC13-208ENST00000397109 GBAP04062 536 aa13.53□□□□□ -0.24
SEC13-208ENST00000397109 ARRB2P32121 409 aa13.53□□□□□ -0.24
SEC13-208ENST00000397109 GALNSP34059 522 aa13.53□□□□□ -0.24
SEC13-208ENST00000397109 ST13P50502 369 aaKnown RBP13.53□□□□□ -0.24
SEC13-208ENST00000397109 TDGF1P3P51864 188 aa13.53□□□□□ -0.24
SEC13-208ENST00000397109 AQP5P55064 265 aa13.53□□□□□ -0.24
SEC13-208ENST00000397109 CSTF3Q12996 717 aaKnown RBP13.53□□□□□ -0.24
SEC13-208ENST00000397109 MAPKAPK3Q16644 382 aa13.53□□□□□ -0.24
SEC13-208ENST00000397109 ARL13AQ5H913 290 aaPredicted RBP13.53□□□□□ -0.24
SEC13-208ENST00000397109 COMMD6Q7Z4G1 85 aa13.53□□□□□ -0.24
SEC13-208ENST00000397109 GALNTL5Q7Z4T8 443 aa13.53□□□□□ -0.24
SEC13-208ENST00000397109 METTL6Q8TCB7 284 aa13.53□□□□□ -0.24
SEC13-208ENST00000397109 SSC4DQ8WTU2 575 aa13.53□□□□□ -0.24
SEC13-208ENST00000397109 SENP5Q96HI0 755 aaPredicted RBP13.53□□□□□ -0.24
SEC13-208ENST00000397109 RYDENQ9NUL5 291 aaKnown RBP13.53□□□□□ -0.24
SEC13-208ENST00000397109 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.53□□□□□ -0.24
SEC13-208ENST00000397109 MYOTQ9UBF9 498 aa13.53□□□□□ -0.24
SEC13-208ENST00000397109 SLC5A6Q9Y289 635 aa13.53□□□□□ -0.24
SEC13-208ENST00000397109 KLF13Q9Y2Y9 288 aaPredicted RBP13.53□□□□□ -0.24
SEC13-208ENST00000397109 HECTD1Q9ULT8 2610 aa13.53□□□□□ -0.24
SEC13-208ENST00000397109 DIDO1Q9BTC0 2240 aaKnown RBP13.52□□□□□ -0.24
SEC13-208ENST00000397109 USP9YO00507 2555 aaPredicted RBP13.52□□□□□ -0.25
SEC13-208ENST00000397109 ASPDHA6ND91 283 aa13.52□□□□□ -0.25
SEC13-208ENST00000397109 NME2P1O60361 137 aa13.52□□□□□ -0.25
SEC13-208ENST00000397109 SLC35E2P0CK97 266 aa13.52□□□□□ -0.25
SEC13-208ENST00000397109 NME2P22392 152 aa13.52□□□□□ -0.25
SEC13-208ENST00000397109 RPL14P50914 215 aaKnown RBP13.52□□□□□ -0.25
SEC13-208ENST00000397109 MAPK12P53778 367 aa13.52□□□□□ -0.25
SEC13-208ENST00000397109 RNF4P78317 190 aa13.52□□□□□ -0.25
SEC13-208ENST00000397109 SF3A3Q12874 501 aaKnown RBP eCLIP13.52□□□□□ -0.258e-7■■□□□ 14.1
SEC13-208ENST00000397109 ASRGL1Q7L266 308 aa13.52□□□□□ -0.25
SEC13-208ENST00000397109 CYP4Z2PQ8N1L4 340 aa13.52□□□□□ -0.25
SEC13-208ENST00000397109 ZNF721Q8TF20 911 aa13.52□□□□□ -0.25
SEC13-208ENST00000397109 KLHL29Q96CT2 875 aa13.52□□□□□ -0.25
SEC13-208ENST00000397109 THOC1Q96FV9 657 aaKnown RBP13.52□□□□□ -0.25
SEC13-208ENST00000397109 FBXL20Q96IG2 436 aa13.52□□□□□ -0.25
SEC13-208ENST00000397109 HES7Q9BYE0 225 aa13.52□□□□□ -0.25
SEC13-208ENST00000397109 GLOD5A6NK44 160 aa13.51□□□□□ -0.25
SEC13-208ENST00000397109 TMEM200CA6NKL6 621 aa13.51□□□□□ -0.25
SEC13-208ENST00000397109 A8MVJ9 347 aa13.51□□□□□ -0.25
SEC13-208ENST00000397109 ANKRD65E5RJM6 399 aa13.51□□□□□ -0.25
SEC13-208ENST00000397109 PRKNO60260 465 aaPredicted RBP13.51□□□□□ -0.25
SEC13-208ENST00000397109 SEMA7AO75326 666 aa13.51□□□□□ -0.25
SEC13-208ENST00000397109 PRKRAO75569 313 aaKnown RBP13.51□□□□□ -0.25
SEC13-208ENST00000397109 OR2J2O76002 312 aa13.51□□□□□ -0.25
SEC13-208ENST00000397109 CHRNGP07510 517 aa13.51□□□□□ -0.25
SEC13-208ENST00000397109 FGF4P08620 206 aa13.51□□□□□ -0.25
SEC13-208ENST00000397109 CALB2P22676 271 aa13.51□□□□□ -0.25
SEC13-208ENST00000397109 PIK3R1P27986 724 aa13.51□□□□□ -0.25
SEC13-208ENST00000397109 SERPINB3P29508 390 aa13.51□□□□□ -0.25
SEC13-208ENST00000397109 NCALDP61601 193 aa13.51□□□□□ -0.25
SEC13-208ENST00000397109 TRA2BP62995 288 aaKnown RBP13.51□□□□□ -0.25
SEC13-208ENST00000397109 ALDH6A1Q02252 535 aaKnown RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms